Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_18473| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_23354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_38624| Best HMM Match : PAN (HMM E-Value=0.0036)                    27   7.1  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      27   7.1  
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)             27   9.4  

>SB_36085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 8   FRALFDVYRNQCCNFYTDN 64
           FR  ++ Y+N+CC++Y D+
Sbjct: 106 FRGCWNQYKNKCCSYYVDD 124


>SB_18473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 SDEEDSIPDVGVEEDSGEHSSGPETSPASIR 230
           SDE+DS+    VEE+S E +  P T  ++ R
Sbjct: 6   SDEDDSLDLFDVEEESDEENVNPNTQTSTSR 36


>SB_23354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 139 EAIATPTSKSAKRKLHLISIVTHRKIIRVKITTLISVNVKKRA 11
           +A + PT ++    LHL    THRK  R+ I T  + N  +R+
Sbjct: 71  QAQSKPTQRNDVLALHLGISATHRKEKRLTILTYTNTNAYRRS 113


>SB_38624| Best HMM Match : PAN (HMM E-Value=0.0036)
          Length = 271

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 17  LFDVYRNQCCNFYTDNFSVR 76
           LF V R  CCN   DNF +R
Sbjct: 104 LFIVNRADCCNHRLDNFEIR 123


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 198 RNVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSV*KLQH 40
           RNV + L   P++    +H KPSP RP+  +  +ST  P +    + +    H
Sbjct: 72  RNVSQVLRVYPQENS--VHSKPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTDH 122


>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
          Length = 604

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 174 PLPRQVYCLLHPKPSPLRPAKVLRENSTSF 85
           PL  QV C+ HP     R A+V R + +SF
Sbjct: 41  PLVGQVVCVKHPASGRWRRAEVTRLSQSSF 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,656
Number of Sequences: 59808
Number of extensions: 271209
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)