Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   5.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 421 SYLCTIIKDLLSYKLVLS*SFCMIWL 498
           +Y+C + K  L Y +  S  F  IWL
Sbjct: 656 TYICYLGKAYLMYAIAGSQCFINIWL 681


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 240 KVEVVWTLGTSLAQRNVHRCLPPL 169
           K + +W L + L  R V  C P L
Sbjct: 132 KFDRLWVLDSGLVNRTVPVCAPKL 155


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 138 SDEEDSIPDVGVEEDSGEHSSGPETSPASIRL 233
           SDE D I     + D+ +HSS   +S + + +
Sbjct: 205 SDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTM 236


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 6   HFARFLTFTEISVVIFTRII 65
           HFA  + +    +VIFT II
Sbjct: 403 HFAAIIEWLSFFIVIFTYII 422


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 86 FHCHAPKNYPCKNYNTDFCKR 24
          FHC A +    K+++  +C++
Sbjct: 4  FHCAAAEGQAKKSFSCKYCEK 24


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 104 EKTPPHFHCHAPKNYPCKNYNTDFCKRQ 21
           EK     HC   K Y   +++TD    Q
Sbjct: 775 EKREKSEHCEKGKEYYAASFHTDIGNSQ 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,430
Number of Sequences: 438
Number of extensions: 2797
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)