Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    29   1.4  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    29   2.5  
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    29   2.5  
At5g36905.1 68418.m04423 RNase H domain-containing protein low s...    27   7.7  

>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 249  ENLKVEVVWTLGT--SLAQRNVHRCLPPLPRQVYCL--LHPKPSPLRPAKVL 106
            ENLK  + W LGT  S+ ++++ + LP L   V  L      P P+RP++ L
Sbjct: 926  ENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIRPSRGL 977


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 177 EDSGEHSSGPETSPASIRLRLLDSHNTIKSLVIYDIVIFCFID 305
           E S  +   P+T P  +R  L ++  T+K L I D+V F F+D
Sbjct: 414 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 456


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 177 EDSGEHSSGPETSPASIRLRLLDSHNTIKSLVIYDIVIFCFID 305
           E S  +   P+T P  +R  L ++  T+K L I D+V F F+D
Sbjct: 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 460


>At5g36905.1 68418.m04423 RNase H domain-containing protein low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278; contains Pfam profile PF00075:
           RNase H
          Length = 633

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 224 GRWGRLWPRGMFTAVF 177
           G WGRL PRG  TA F
Sbjct: 351 GIWGRLVPRGKITAFF 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,027,440
Number of Sequences: 28952
Number of extensions: 199467
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)