Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   1.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.2  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    26   3.9  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   5.2  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.8  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   6.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.0  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 348 GVSVCNIEITAFYYMHINILYTPK*HFFKFLSVCLFVPANLWNG 217
           G+      ++ + Y  +N+ ++ K    K L+VC  V + LW G
Sbjct: 135 GIPTIKAILSGYKYPDMNVFFSIKTLCSKSLAVCFSVASGLWVG 178


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 240 QTDRQTKI*KNVILVYIIYLYACSKKRLFQYYKQTLQFYLYVYMITDGRRLIMFTTKQQI 419
           Q    T + ++  + Y  +L   S   LF Y K TL +  Y+   TDGR       K   
Sbjct: 347 QFPNSTVLNEHGYVTYNGWLAQWSMITLFDY-KTTLAYLAYLGFDTDGRGHNTDALKVMR 405

Query: 420 KNANENRK 443
           K  ++NRK
Sbjct: 406 KRVSQNRK 413


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 254 DKNLKKCYFGVYNIFI-CM**KAVISILQTDT 346
           ++N KKC F   +IFI  +   + +S+LQ DT
Sbjct: 16  NRNFKKCLFACISIFIFALLALSFLSLLQPDT 47


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = -1

Query: 452 CSIFTILICVFYLLFCRKHDQSSAVRDHIYI*IKLECLFVILK*PLFTTCI*IYYIHQNN 273
           C I  +L  +  L+ C          D I    +L  L+V     +F T   +Y  H N 
Sbjct: 92  CLILFLLFWIIVLISCADSKALPKNADSILKAYRLSVLYVWAIDIVFETIFIVYSPHPNE 151

Query: 272 IFLNFCLSVCLFRLI 228
            F    L+  + RL+
Sbjct: 152 TFQGIVLADHVARLV 166


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 377 GRPKTDHVYDKTTNKKR 427
           GR KT  ++D T+NKK+
Sbjct: 240 GRDKTIRIWDSTSNKKK 256


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 61  NTSDPPSLRFRNIKFYY 111
           N+SDPPS+  R  +++Y
Sbjct: 166 NSSDPPSIEIRGNRWFY 182


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 494 YQSYYRNKMEAWTQCSIFTILICVFYLLFC 405
           +Q +Y      W +   F I+ CVF+ L C
Sbjct: 182 WQGFYMVLAVYWVKHRDFPIVQCVFFTLHC 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,527
Number of Sequences: 5004
Number of extensions: 39156
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)