Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    28   5.2  
02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587           27   9.1  

>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 214 PAVPEISRNKQTDRQKFKKML-FWCI*YIYMHVVKSGY 324
           P VPEI+   +TDR K++     W     YM++   GY
Sbjct: 342 PLVPEIAHMYKTDRHKYENTARTWTQSSSYMYIFTYGY 379


>02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587
          Length = 88

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 290 YIHQNNIFLNFCLSVCLFRLISGTAGP 210
           Y+H+  IF NFC S+  F LI     P
Sbjct: 26  YMHRLEIFSNFCSSLVTFLLIEHLKKP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,553
Number of Sequences: 37544
Number of extensions: 207485
Number of successful extensions: 426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)