Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical p... 31 0.66
Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical p... 31 0.66
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC199172-4|ABO33272.1| 304|Caenorhabditis elegans F-box a prote... 28 3.5
Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical p... 27 6.2
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical... 27 6.2
AF022972-12|AAC48232.1| 363|Caenorhabditis elegans Seven tm rec... 27 6.2
U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine rece... 27 8.1
>Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 30.7 bits (66), Expect = 0.66
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 484 IIETKWKHGHNVQFLR--FSFAFFICCFVVNMISLRPS 377
I++ KWK +LR F FF CCFV + LRPS
Sbjct: 416 ILDEKWKAYGRALWLRSLLGFIFFYCCFVCAYM-LRPS 452
>Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 30.7 bits (66), Expect = 0.66
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 484 IIETKWKHGHNVQFLR--FSFAFFICCFVVNMISLRPS 377
I++ KWK +LR F FF CCFV + LRPS
Sbjct: 416 ILDEKWKAYGRALWLRSLLGFIFFYCCFVCAYM-LRPS 452
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 446 IFTILICVFYLLFCRKHDQSS 384
IF IL VF +LF KHD SS
Sbjct: 28 IFLILSIVFIILFATKHDSSS 48
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 446 IFTILICVFYLLFCRKHDQSS 384
IF IL VF +LF KHD SS
Sbjct: 41 IFLILSIVFIILFATKHDSSS 61
>Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical
protein M199.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 488 SYYRNKMEAWTQCSIFTILICVF--YLLFCRK--HDQSSAVRDHIYI*IKLECLF 336
+YYRN +AW T ++ +F Y +K QSS I+I + C F
Sbjct: 196 NYYRNASQAWNNWIFITCMVVLFTLYYALVKKLARGQSSKASRAIFIQCCIICFF 250
>AC199172-4|ABO33272.1| 304|Caenorhabditis elegans F-box a protein
protein 29 protein.
Length = 304
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 366 IHINKIGVSVCNIEITAFYYMHINILYT 283
+H NKI + +CN + + Y+ I I+Y+
Sbjct: 46 VHFNKISIELCNCYV-SIYFDEIEIIYS 72
>Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical
protein Y41E3.15 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/65 (20%), Positives = 28/65 (43%)
Frame = -1
Query: 485 YYRNKMEAWTQCSIFTILICVFYLLFCRKHDQSSAVRDHIYI*IKLECLFVILK*PLFTT 306
YY+N+ + W T ++ ++ + F + + + I ++C+ + TT
Sbjct: 197 YYKNRSQGWHNWIFVTAMVLLYVIYFLKVRKIARGQKSKASTAILVQCIIICF---FNTT 253
Query: 305 CI*IY 291
C IY
Sbjct: 254 CALIY 258
>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
protein Y53F4B.21 protein.
Length = 1099
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 279 LVYIIYLYACSKKRLFQYYKQTLQFYLYV-----YMITDGRRL 392
+V + +Y S+KR+F +YK YL++ M TDG R+
Sbjct: 71 MVTVGKVYQESRKRVFAHYKNIRNMYLFLTAEESLMDTDGHRI 113
>AF022972-12|AAC48232.1| 363|Caenorhabditis elegans Seven tm
receptor protein 204 protein.
Length = 363
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 255 TKI*KNVILVYIIYLYACSKKRLFQYYKQTLQFYLYVYMITD 380
T + NV+L+Y+I Y+ S+ ++Y + + +Y I D
Sbjct: 19 TAVPLNVLLIYLIIKYSSSEIGAYKYLMIYISVFELIYAIID 60
>U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein212 protein.
Length = 330
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 294 YLYACSKKRLFQYYKQTLQFYLYVYMITDGRRLIMFTTKQQIKNANENRKN*TLCPCFHF 473
YLY +RLF +Y L ++VY G I+F T +K+ + N CF
Sbjct: 11 YLYTADFQRLFLHYFGFLAIPVHVY----GAYCIIFHTPSSMKSVKLSLLNFHFFSCFFD 66
Query: 474 VSIITLVILELFF 512
+ + L + F
Sbjct: 67 LGLSFLTTPYILF 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,556
Number of Sequences: 27780
Number of extensions: 218765
Number of successful extensions: 555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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