Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 326  SILQTDTPILFICIYDHGRPKTDHVY 403
            +++ T+T +      DH RP ++H+Y
Sbjct: 1310 NLIATNTTVSSGSSEDHRRPLSEHIY 1335


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 276 ILVYIIYLYACSKK--RLFQYYKQTLQFYLYVYMITDG 383
           + V+    Y   KK   L+Q Y+Q+L  Y Y  +I  G
Sbjct: 427 VAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLILPG 464


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 446 IFTILICVFYLLFCRKHDQSSAVRDHIYI*IKLECLFVILK*PLF 312
           I  I++C  Y +  RK  ++     HI   +   C+  +   PL+
Sbjct: 824 IMLIVVCTVYAVLTRKIPEAFNESKHIGFTMYTTCVIWLAFVPLY 868


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -1

Query: 296 IYYIHQNNIFLNFCLSVCLFRLISGTAG 213
           +Y+++  ++F+     +C+  LI   +G
Sbjct: 235 VYFLNMASVFMRIFNLICMMLLIGHWSG 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,250
Number of Sequences: 438
Number of extensions: 2919
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)