Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48640.1 68416.m05310 expressed protein                             31   0.47 
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   3.3  

>At3g48640.1 68416.m05310 expressed protein 
          Length = 224

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 487 VIIETKWKHGHNVQFLRFSF--AFFICCFVVNMI-SLRPS 377
           V++E K+KH    + ++F F    FI CFVV ++  L P+
Sbjct: 127 VVLEKKYKHAKRKRIMKFGFGAVIFIPCFVVAVVGQLNPA 166


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 393 IMFTTKQQIKNANENRKN*TLCPCFHFVSIITLVILELFFL 515
           +MF  K   K A+   KN  LC     VS I L IL++FFL
Sbjct: 48  VMFFVKMYTKMADPRTKNPNLCIPILCVSWI-LTILDIFFL 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,976,952
Number of Sequences: 28952
Number of extensions: 185575
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)