Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   0.94 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   1.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = +2

Query: 266 RHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 445
           +H+Q Q++  ++ +   +   P+    +P PV+ +   +  S  S+P      H  +   
Sbjct: 130 QHNQQQSVEKSSKLKNKSA--PILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPN 187

Query: 446 YPKYEYNYSVADGHS 490
           Y K + + S     S
Sbjct: 188 YIKPQLHVSTGSTSS 202


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 77  SSGPVPPGD 51
           SSGP PPGD
Sbjct: 275 SSGPAPPGD 283


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = -1

Query: 206 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGP 66
           T Q  +    G   + Q PQ H  H   +H +   G++       GP
Sbjct: 158 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH-MMYGGQQGANMHQQGP 203


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = -1

Query: 206 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGP 66
           T Q  +    G   + Q PQ H  H   +H +   G++       GP
Sbjct: 160 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH-MMYGGQQGANMHQQGP 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,401
Number of Sequences: 336
Number of extensions: 1508
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)