Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1) 30 1.0
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014) 30 1.3
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 3.1
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 3.1
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7) 28 4.1
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 5.4
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 27 9.4
SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7) 27 9.4
>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
Length = 159
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 239 ESVSSQNIIRHDQPQTINYAA-PVAKLAVATP--VTYHAAPAPVTYHAAPAAVSYHSAPV 409
+ V+ ++ + P + Y P TP VTY+ P VTY V+Y P
Sbjct: 33 DCVTPYHVTYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHVTYSVTLYHVTYCVTPY 92
Query: 410 AKIVAHQAEEI 442
A H+ +EI
Sbjct: 93 ATAATHKKKEI 103
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 245 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 153
+ +QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 751 KIEQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 782
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 245 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 153
+ +QT +EQ HG ++ HGK + GK+++
Sbjct: 786 KIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQ 817
>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
Length = 178
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 245 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 153
+ +QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 81 KIEQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 112
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 245 RTQQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 153
+ +QT +EQ HG ++ HGK + GK+++
Sbjct: 116 KIEQTRGKIEQTHGKIEQTHGKIEQTHGKIEQ 147
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 71 GPVPPGDQLGTTPQMRT 21
G VPPGD++G TP RT
Sbjct: 212 GGVPPGDEVGITPMYRT 228
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 296 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 412
AAP A++ A VT AAPA PVT AAPA H A
Sbjct: 90 AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 130
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 296 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 412
AAP A++ A VT AAPA PVT AAPA H A
Sbjct: 247 AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 287
>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
Length = 293
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 278 PQTINYAAPVAKLAVATP---VTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAY 448
P I P + + V P + YHAA HA ++H+A K+ A I Y
Sbjct: 168 PSLITVTLPPSNITVTLPPSFINYHAATTQYDRHATTKLYNHHAA--TKLYNRHAATILY 225
Query: 449 PKY 457
++
Sbjct: 226 NRH 228
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -1
Query: 221 LEQHGTLQGQHG-----KPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 57
+ G Q +HG K QG G+ Q +E RH ++ S ++MS P
Sbjct: 640 ISSQGMQQSEHGIFGSRKRQGNGGQPSSDQLPSEINIARHAIKISEESEKRKMSEERGPS 699
Query: 56 GDQL 45
GD L
Sbjct: 700 GDGL 703
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +2
Query: 296 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 406
AAP A PV AAPAP APAA S +AP
Sbjct: 95 AAPAPAAAAPAPVPAAAAPAP-----APAAPSAAAAP 126
>SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7)
Length = 481
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 239 QQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNE 135
++T LE G ++ P +RG+L EP +NE
Sbjct: 274 RETFEALEPGGFIESDRSAPGHRRGRLSEPIVNNE 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,662,909
Number of Sequences: 59808
Number of extensions: 181541
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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