Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C11f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 0.87
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 29 2.0
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.0
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 4.7
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 28 4.7
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 28 4.7
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 28 4.7
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 28 4.7
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 27 6.2
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 27 6.2
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 27 6.2
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 27 6.2
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 27 8.1
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 27 8.1
DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic mul... 27 8.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 27 8.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 27 8.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 27 8.1
AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical... 27 8.1
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 27 8.1
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 27 8.1
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 30.3 bits (65), Expect = 0.87
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 245 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 406
V+ +I + QP Y APVA +A PAP+ H AP ++ H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416
Query: 407 VAKIVAHQ 430
K+VA +
Sbjct: 417 ETKVVAEE 424
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -1
Query: 281 GADHDG*CSGKRRTQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 114
G G CSG R + + G HG+ G G G G HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 197 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 108
G HG P + P RH H HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 296 AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQA 433
+ P A + A P T APA VT AAPAAV+ +A VA A
Sbjct: 192 SGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAA 239
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 341 HAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQ 508
+AAPAP + A PA + SAP IVA + A P ++ + V D +G ++S+
Sbjct: 80 YAAPAP--FAAQPAQFAVQSAPPQPIVAPPPQAYAAP-HKRHVDVMDIDTGVDQSE 132
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 299 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 448
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 299 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 448
APV + VA P AA PAP AAPAA + +AP A ++++ AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +2
Query: 299 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 445
APV A A Y APAPV A A +Y APVA + A +A
Sbjct: 83 APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 442
DQ ++IN A P A A P T A P + + AA ++V+HQA
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414
Query: 443 AYP 451
YP
Sbjct: 415 GYP 417
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 299 APVAKLAVATPVTYHAAP----APVTYHAAPAA 385
AP A++A TPV AP AP T AAPAA
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAA 288
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 284 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 454
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 284 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 454
T+ P + +V V +APAP+++ AA AA ++ + K A + A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +2
Query: 230 SSAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 409
S+ S SSQ+ + Q NY + + ++ T P PV + + SYH+
Sbjct: 578 SAYNSQSSQHQTKSIPVQ--NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERS 634
Query: 410 AKIVAHQAEEIAYPKYEYNYSVADGHS 490
+ A Q + IA P + N S + HS
Sbjct: 635 STTTAQQPQTIALPPPQNNSSHTETHS 661
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -1
Query: 242 TQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPV 63
T +T + + + Q K Q + QEPQ H +H+ + + PQ S+
Sbjct: 96 TPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQ 155
Query: 62 P 60
P
Sbjct: 156 P 156
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -1
Query: 242 TQQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPV 63
T +T + + + Q K Q + QEPQ H +H+ + + PQ S+
Sbjct: 96 TPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQ 155
Query: 62 P 60
P
Sbjct: 156 P 156
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 278 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 412
P + AP+ A A Y AP P AAPA +AP A
Sbjct: 52 PMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPVFAAPFA 96
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 245 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS 400
++ +N I H + N A + V T VTY+A P P+ + P SYH+
Sbjct: 385 INLRNEINHYRKLMEN--AEHLRTTVQTHVTYNAPPPPLP-QSGPRTTSYHA 433
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 209 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 45
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 44 GTTP 33
P
Sbjct: 536 QQRP 539
>DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic
multivulva protein LIN-8 protein.
Length = 386
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 317 AVATPVTYHAAPAPVTYHAAPAAV 388
AV PVT+ A PAP AP+ V
Sbjct: 287 AVQKPVTFSAQPAPAPVREAPSPV 310
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 209 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 45
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 418 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 475
Query: 44 GTTP 33
P
Sbjct: 476 QQRP 479
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 209 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 45
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 415 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 472
Query: 44 GTTP 33
P
Sbjct: 473 QQRP 476
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 209 GTLQGQHGKPQGQRGKLQ-EPQRHNEHRGFRHGVRCSGRKLPQ----QMSSGPVPPGDQL 45
G Q + G+PQ Q+G + PQ++N+ + GVR G Q Q + P PP Q
Sbjct: 478 GVYQNRMGRPQNQQGGPRGPPQQYNQVA--QGGVRMQGPPRTQNPGVQQQNVPRPPQQQQ 535
Query: 44 GTTP 33
P
Sbjct: 536 QQRP 539
>AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical
protein B0454.1 protein.
Length = 386
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 317 AVATPVTYHAAPAPVTYHAAPAAV 388
AV PVT+ A PAP AP+ V
Sbjct: 287 AVQKPVTFSAQPAPAPVREAPSPV 310
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 236 AESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 412
AE+ + + + P + APV PV PAPV AP A + +
Sbjct: 282 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 341
Query: 413 KIVAHQ 430
IV Q
Sbjct: 342 DIVEEQ 347
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 236 AESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 412
AE+ + + + P + APV PV PAPV AP A + +
Sbjct: 222 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 281
Query: 413 KIVAHQ 430
IV Q
Sbjct: 282 DIVEEQ 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,439,643
Number of Sequences: 27780
Number of extensions: 134458
Number of successful extensions: 600
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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