Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    32   0.27 
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi...    31   0.36 
At3g12410.1 68416.m01546 hypothetical protein                          29   1.4  
At2g34330.1 68415.m04202 expressed protein                             29   1.9  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    29   2.5  
At3g12440.1 68416.m01549 extensin family protein contains simila...    28   3.3  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   3.3  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    28   3.3  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    28   3.3  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    28   3.3  
At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote...    28   4.4  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    27   5.8  
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai...    27   5.8  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    27   7.7  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 296 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 406
           +AP  +     PV +H+ P P+ +H+ P  V + S P
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPPVIHQSPP 733



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 299 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 421
           APV   +   P+ +H+ P PV + + P     +  P+  ++
Sbjct: 707 APVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVI 747


>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (DXR) nearly identical to
           1-deoxy-d-xylulose-5-phosphate reductoisomerase
           [Arabidopsis thaliana] GI:4886307; contains Pfam profile
           PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
          Length = 477

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 149 QRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLGTTPQ 30
           +R N+ RGF  GV+CS  K+ QQ    P  PG  +   P+
Sbjct: 36  RRRNQGRGFGKGVKCS-VKVQQQQQPPPAWPGRAVPEAPR 74


>At3g12410.1 68416.m01546 hypothetical protein
          Length = 230

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 326 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 421
           TP +Y++ P P  Y+A P  + Y+S   A I+
Sbjct: 65  TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96


>At2g34330.1 68415.m04202 expressed protein 
          Length = 143

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 173 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 57
           ++ K ++ +R NE R F H V    +K P+Q SS  V P
Sbjct: 68  KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
 Frame = +2

Query: 254 QNIIRHDQPQTIN---YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 424
           +N + HD    ++   +   V ++ V T  T   APAPVT        SY  +PV++  +
Sbjct: 123 RNSVTHDTSHVLDSFLWDVDVVEILVGT-TTPAPAPAPVTTPPPHRRPSYTYSPVSRTSS 181

Query: 425 HQAEE---IAYPKYE---YNYSVAD--GH 487
            ++EE   +  PK E     Y +AD  GH
Sbjct: 182 EKSEEELTVPPPKSEGRPIYYHIADEEGH 210


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 326 TPVTYHAAPAPVTYHAAPAAVSYHS 400
           +PV+YH+  +PVT+H     V Y S
Sbjct: 73  SPVSYHSDSSPVTHHYDSPPVCYRS 97



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 269 HDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS-APVAK 415
           H       Y +PV+  + ++PVT+H    PV Y +      Y S +P A+
Sbjct: 63  HPTSPPARYHSPVSYHSDSSPVTHHYDSPPVCYRSDSPPAQYCSVSPPAR 112


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  LWRCPKLVSWRNRSTTHLLGQFPPR 104
           L +C  LV W + +T HL G+ PPR
Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 263 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 415
           ++H  P  +  + P      + P  Y + P PV Y++ P        PV K
Sbjct: 50  VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 263 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 406
           ++H  P  +  + P      + P  Y + P PV Y + P  V ++S P
Sbjct: 66  VKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPV-YKSPPPPVKHYSPP 112


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 263 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 415
           ++H  P  +  + P      + P  Y + P PV Y++ P        PV K
Sbjct: 50  VKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 263 IRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 406
           ++H  P  +  + P      + P  Y + P PV Y + P  V ++S P
Sbjct: 66  VKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPV-YKSPPPPVKHYSPP 112


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 215  QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 129
            Q+G  Q Q+G+ Q Q G+LQ EP R  E++
Sbjct: 926  QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955


>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3360289 from [Zea mays]
           (Plant Mol. Biol. 37 (5), 749-761 (1998))
          Length = 719

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -1

Query: 260 CSGKRRTQQTNSGLEQHGTLQG 195
           CSG R TQ   SGLE  GTL G
Sbjct: 68  CSGSRVTQIKLSGLELSGTLGG 89


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 218 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 114
           E H  L       QG +G+L  PQ  +  RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290


>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 624

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 389 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 472
           SY +AP   +V+H A +IA+ +  Y YS
Sbjct: 78  SYTTAPARNVVSHHA-QIAWRRLHYKYS 104


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/73 (26%), Positives = 25/73 (34%)
 Frame = +2

Query: 278 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKY 457
           P     A P   +  A P  Y   P P  Y A P      + P       Q   +  P+Y
Sbjct: 320 PPNYGGAPPANNMGGAPPPNYGGGPPP-QYGAVPPPQYGGAPPQNNNYQQQGSGMQQPQY 378

Query: 458 EYNYSVADGHSGD 496
           + NY      SG+
Sbjct: 379 QNNYPPNRDGSGN 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,994
Number of Sequences: 28952
Number of extensions: 123073
Number of successful extensions: 611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)