Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.97 
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   1.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.7  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   2.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   5.2  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    25   6.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   9.0  

>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 107 QWNSILQYLP*FPVI*LALDIIQLVDSTSYL 15
           +WNS L++L   P   L +DI+++V+  +YL
Sbjct: 173 EWNSHLRHLLNIPKCFLGVDIVEIVNFFNYL 203


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 152 RVSFPLSAEPH-ITFYSKFPPHQELYQTY 235
           RV  P   + H +   + FPPH++++QT+
Sbjct: 416 RVKLPFGRKIHFVVMNNLFPPHRDIHQTF 444


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 471  YWGSFNHPSNLSFIYYCRDMKTYKTNFFCILKFYT 367
            +W S     N S +Y+ R +  Y ++ F   +FYT
Sbjct: 1002 FWTSLGFAINNSLLYFVRALLFYCSSIFISKEFYT 1036


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 235 LEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKK 393
           +EG + D  +K PP      ++ +++WH     Y   P++E       +  KK
Sbjct: 216 VEGELADPDDKLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKK 268


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 12  PQVRRAIYQLDNI*CQLNNWKSW 80
           P+VR A+   D++   +N W++W
Sbjct: 135 PEVRAAVNPTDDVNLPVNTWRTW 157


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 462 SFNHPSNLSFIYYCRDMKTYKTNFFCILKF 373
           +F   S   F+YYC+    + +  F I+KF
Sbjct: 67  TFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 143 WH*SWLC--KEPGLQWNSILQYLP*FPVI*LALDIIQLVDS 27
           W  S +C  K P   WNSI Q +P    +   LD   LVD+
Sbjct: 228 WTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDA 268


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 172 SRTTYNLLFKISTPSGTISDILEGNVVDYYNKDPPTSF 285
           S TT  ++ K   P G   ++++GN+ DYY +   T F
Sbjct: 295 SYTTLRMIMK-GVPIGE-EEVVQGNIQDYYIRPIKTVF 330


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 242 VMLLIITTKTHQLLLSSSKIFGYRGTVENFNMV 340
           + LL + +K    L+SSS+I  Y    E+F +V
Sbjct: 314 LFLLSVPSKVRDALISSSRILLYTPENEHFGIV 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,196
Number of Sequences: 5004
Number of extensions: 51959
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)