Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1671 - 39018929-39019027,39019310-39019439,39019529-390196...    29   2.3  

>01_06_1671 -
           39018929-39019027,39019310-39019439,39019529-39019637,
           39020183-39020216,39020376-39021151,39021328-39021464,
           39021732-39021876,39021958-39022341,39022435-39023210,
           39023609-39023658,39024213-39024262,39024361-39024455,
           39024539-39024797,39024943-39024982
          Length = 1027

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 217 GTISDILEGNVVDYYNKDPPTSFIEFKDF 303
           G +SDI+  NV  + NKD PTS I   +F
Sbjct: 826 GELSDIVHDNVNAFDNKDMPTSEITVLEF 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,964
Number of Sequences: 37544
Number of extensions: 289268
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)