Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)                     33   0.14 
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   30   1.3  
SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)                28   4.1  
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         27   7.1  
SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
          Length = 668

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 450 PSNLSFIYYCRDMKT-YKTNFFCILKFYTSHGFNVRTQTILKFSTV 316
           P  L ++YY R+++T Y+ +FF    +Y  H FN +  T+  FS +
Sbjct: 581 PIGLLYVYYARNIRTKYQLDFFKRASYYDKHLFN-KYPTVALFSNL 625


>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 372 YTSHGFNVRTQTILKFSTVPRYPKIFELDKRSWWVFVVIINNI 244
           +  HG      T++  S  P  P  F  DK +W V + I+ +I
Sbjct: 59  HQGHGATTTCSTLISLSGWPHNPLTFNTDKLAWSVRLAILQHI 101


>SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)
          Length = 605

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 450 PSNLSFIYYCRDMKTYKTNFFCILKFYTSH 361
           P+N ++ YY +D   +K      L+FYT H
Sbjct: 231 PANFTWEYYDKDKNFFKLEDITPLQFYTEH 260


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 229 DILEGNVVDYYNKDPPTSFIEFKDFWISWHS 321
           D   G  VD Y  D PT  + FK F  +W S
Sbjct: 332 DYFTGTAVDVYPLDQPTDIVNFKRF--AWGS 360


>SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 336 ILKFSTVPRYPKIFELDKRSWWVFVVIINNITL 238
           + +  T P+YP++       W+V V II N +L
Sbjct: 399 VTELPTQPKYPRVSAWALNKWFVAVTIIRNPSL 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,831
Number of Sequences: 59808
Number of extensions: 338457
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)