Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 IFGYRGTVENFNMVCVLTL 355
           IFGY+GT  N  +V V T+
Sbjct: 282 IFGYQGTYVNLVIVKVFTI 300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 125 RANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQTY 235
           R NS       S  +   P  T Y KFP   E+Y  Y
Sbjct: 134 RMNSGMFTTAFSIAVLYRPD-TKYMKFPAIYEIYPNY 169


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 125 RANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQTY 235
           R NS       S  +   P  T Y KFP   E+Y  Y
Sbjct: 134 RMNSGMFTTAFSIAVLYRPD-TKYMKFPAIYEIYPNY 169


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 117 TWPSVEFNSTISPMISSYLIGI 52
           TW S EF+S  S  + SY I +
Sbjct: 96  TWKSSEFDSINSIRVKSYEIWV 117


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 283 FIEFKDFWISWHSG 324
           F+   D WISW  G
Sbjct: 381 FLTRGDLWISWEEG 394


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 285 YRVQRFLDIVAQWKISIWSV 344
           Y  + F+D+   WK   W +
Sbjct: 184 YNNKNFVDLSDYWKSGTWDI 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,427
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)