Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17710.1 68416.m02260 F-box family protein contains F-box dom...    31   0.36 
At5g61340.1 68418.m07697 expressed protein                             31   0.47 
At4g32920.1 68417.m04685 glycine-rich protein                          28   4.4  

>At3g17710.1 68416.m02260 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 368

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/68 (26%), Positives = 23/68 (33%)
 Frame = -3

Query: 471 YWGSFNHPSNLSFIYYCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIFE 292
           YW + NHP  L +     D        FC+L      G N     + K        + FE
Sbjct: 205 YWLAHNHPETLEYFIETFDFSMEIFKPFCLLPCRKDFGSNELVLAVFKEDRFSLLKQCFE 264

Query: 291 LDKRSWWV 268
             K   WV
Sbjct: 265 TTKIEIWV 272


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 462 SFNHPSNLSFIYYCRDMKTYKTNFFCIL 379
           S NH ++ S ++Y R +KTY  NFF +L
Sbjct: 111 SNNHSADSSSVFYLRLLKTYVCNFFFLL 138


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 174  QNHI*PFIQNFHPIRNYIRHIR 239
            +NH   F +NF P+R+ I H+R
Sbjct: 1213 ENHSGDFRENFQPLRSEINHVR 1234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,089,265
Number of Sequences: 28952
Number of extensions: 254616
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)