Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C04f
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 2.8
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 3.8
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 27 8.7
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.7
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 27 8.7
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 236
T T P+++ A PE + A PE + A PE++
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 236
T T P+++ A P+ + A PE + A PE++
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACP 227
T T PE++ A PE + A PE + A P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 135 CVSQNTGTCPESSCACPEISCACPETSC 218
CVS P + ACP ++ AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 135 CVSQNTGTCPESSCACPEISCACPETSCACPESS 236
C+ N C + + C S CP+ S CP+S+
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 141 SQNTGTCPESSCACPEISCACPETSCACPESS 236
S++ TC S CP+ S CP+++ E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 144 QNTGTCPESSCACPEISCACPETSCACPESS 236
+ T PE + A PE + PE + CPE +
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 144 QNTGTCPESSCACPEISCACPETSCACPESS 236
+ T PE + A PE + A PE + A PE +
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGN 163
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 135 CVSQNTGTCPESSCACPEISCACPETSCAC 224
C +TG P ++C C I P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 135 CVSQNTGTCPESSCACPEISCACPETSCAC 224
C +TG P ++C C I P T+C C
Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQC 990
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 135 CVSQNTGTCPESSCACPEISCACPETSCAC 224
C +TG P ++C C I P T+C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQC 1032
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 135 CVSQNTGT--CPESSCACPEISCACPETSCACPESSC 239
C S +GT CP ++ + C + +C C +SC
Sbjct: 173 CYSCESGTDVCPLATPCASQFGITCRKLTCFCSRTSC 209
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 165 ESSCACPEISCACPETSCACPESSC 239
E +CAC CP+ C P C
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFC 93
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 214 LVSGQAQLISGQAQLLSGQVPVFWLT 137
++ GQ Q++SG AQ + G + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 165 ESSCACPEISCACPETSCACPESSC 239
E +CAC CP+ C P C
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFC 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.292 0.114 0.279
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,278
Number of Sequences: 59808
Number of extensions: 53819
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.6 bits)
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