Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C04f
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.1  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACP 227
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACP 227
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACP 227
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 132 TCVSQNTGTCPESSCACPEISCACPETSCACP 227
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 SCACPEISCACPETSCACPES 233
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 SCACPEISCACPETSCACPES 233
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 138 VSQNTGTCPESSCACPEISCAC 203
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.292    0.114    0.279 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,127
Number of Sequences: 27780
Number of extensions: 39769
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.6 bits)