Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C04f
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.19 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.19 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 135 CVSQNTGTCPESSCACPEISCACPETSCACPE 230
           C + N G C       P I+   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 135 CVSQNTGTCPESSCACPEISCACPETSCACPE 230
           C + N G C       P I+   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 265  QGLQVWGQRQLLSGQAQLVSGQAQLISGQAQLLSGQ 158
            QG QV   +  +  QAQ  SGQ+++I+   Q    Q
Sbjct: 1153 QGKQVIQTQYQVVSQAQTSSGQSKIIASTQQQQQSQ 1188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.292    0.114    0.279 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,879
Number of Sequences: 438
Number of extensions: 436
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.4 bits)