Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850...    33   0.18 
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971...    31   0.56 
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305           31   0.74 
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    31   0.74 
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240...    30   0.98 
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493...    30   1.3  
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    29   2.3  
03_05_0437 - 24293236-24294120                                         29   2.3  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    29   3.0  
12_01_0215 - 1634141-1634144,1634467-1634510,1635639-1635668,163...    28   4.0  
08_01_0336 - 2993322-2993711                                           28   4.0  
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444...    28   4.0  
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    28   4.0  
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983...    28   5.2  
01_06_1802 + 39978634-39978880,39979016-39979431                       28   5.2  
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211...    27   6.9  
12_01_0361 - 2743355-2744134                                           27   9.1  
06_03_1158 - 28080330-28080647,28080726-28080949,28081213-280814...    27   9.1  
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           27   9.1  
02_03_0181 + 16100495-16101025,16101335-16101358                       27   9.1  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    27   9.1  
01_01_0888 + 6990354-6991862,6991970-6992431                           27   9.1  

>11_02_0119 -
           8502455-8503015,8503311-8504009,8504512-8504571,
           8504744-8504800
          Length = 458

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 123 QIPEYECVAQSGPQHQATFEFRC-KALGESVSASARSKREA 242
           ++ E E  +Q  P+   T   RC K+ G+ VSA AR+KR+A
Sbjct: 292 RVEELESSSQPSPRPMETTRRRCCKSTGKKVSAGARAKRKA 332


>11_03_0085 -
           9717360-9717390,9717478-9717603,9718600-9718666,
           9718770-9718831,9718904-9719094,9720133-9720268,
           9720760-9720851,9721231-9721413
          Length = 295

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 173 GLVLGP*LSNTFILWNLSKFHHHFLQYCYGS--FHLVVRFLKLKTGT 39
           G+++G    +TF ++ +S +   FL +C  S  +HL V F KL+  T
Sbjct: 68  GVLIGDEFGDTFAVFVVSPYDLKFLDFCLESCQYHLNVSFHKLRNST 114


>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
          Length = 611

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 374 FALGALASRLVTMRGLCKFSSKWWGYT 294
           F   +LA+R V++ G  +FS  WW YT
Sbjct: 474 FLYASLAARAVSLFGGVRFSLAWWAYT 500


>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
            25450299-25450628,25451090-25451362,25451471-25451929,
            25452307-25452516,25452617-25452828,25453304-25453404,
            25453584-25454008,25454167-25454360,25454436-25454701,
            25454809-25455015,25455121-25455281,25455741-25455933,
            25456158-25456251,25457238-25457373,25458074-25458202,
            25458315-25458449,25458549-25458613,25459875-25459950,
            25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = +3

Query: 129  PEYECVAQSGPQHQATFEFRC--------KALGESVSASARSKREAKQEAARAMLLCLST 284
            PE++   + GP H   F ++           L E  S     K+ A++ AA+  L CL  
Sbjct: 1486 PEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKKAAQEHAAQGALWCLKQ 1545

Query: 285  IGH 293
            +GH
Sbjct: 1546 LGH 1548


>05_03_0242 +
           10823312-10823342,10823662-10823732,10824010-10824021,
           10827329-10827394,10827564-10827766,10827977-10828266,
           10828377-10828468,10829876-10830344,10830670-10830978,
           10831290-10831364,10831457-10831614
          Length = 591

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 204 ESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF----ATEFTQPSHSNQSAGECSEG 371
           ES+   AR+K EAK + + A +  +   GH VP P        FT P + +     C   
Sbjct: 313 ESMERLARAKVEAKSKGSEACMELVEADGHPVPGPVWHAAVRVFTYPHYCS-----CFM- 366

Query: 372 KAPTVDSRSYVALL 413
           K PT ++RS   L+
Sbjct: 367 KLPTAEARSVYILM 380


>05_05_0070 +
           22148595-22148907,22148988-22149104,22149196-22149350,
           22149987-22150061,22150179-22150469,22150942-22151292,
           22151390-22151794
          Length = 568

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 276 LSTIGHRVPPPFATEFTQPSHS-NQSAGECSEGKAPTVDSRSY 401
           +ST G   PPP+AT +  PS S  Q +   + G+A  VD RS+
Sbjct: 502 VSTSG--TPPPYATAYATPSFSPAQLSSPSNIGRALLVDRRSH 542


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 75  MKTPITVLQEMMMKLGQIPEYECV-AQSGPQHQATFEFRCKALGESVSASARSKREAKQE 251
           +K  I +++E+ + +  +P+ E V A +    Q T EF C+ L  S S+    + E    
Sbjct: 639 LKKQIDIVEELDLGMSCVPDGEYVLAPTNYSRQQTTEFSCQELVPSNSSILPEQSETNGV 698

Query: 252 AARAMLLCLS 281
             +  + C S
Sbjct: 699 GLKGTIDCFS 708


>03_05_0437 - 24293236-24294120
          Length = 294

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 246 ALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSS 109
           A LPSL+ + +R THL+  S    +P V A    H   L  ++V+S
Sbjct: 142 ARLPSLLPRWRRLTHLELDSKPSSFPAVAAALALHCPDLAVLRVTS 187


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 234 SLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFLAVLL 88
           ++++++++ + L+P+S     P V   TE H    E+V    SF AV L
Sbjct: 458 NILLRRRKYSSLRPFSTIAPRPYVSKSTEPHNDVDEAVCQQGSFAAVTL 506


>12_01_0215 -
           1634141-1634144,1634467-1634510,1635639-1635668,
           1635784-1635891,1635975-1636060,1636779-1636866,
           1638135-1638253,1638525-1638600,1638820-1638882,
           1639536-1639592,1640016-1640056,1640642-1640738,
           1641636-1641692
          Length = 289

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 173 GLVLGP*LSNTF----ILWNLSKFHHHFLQYCYGSFHLVVRFLKLKTGTVKAKSL 21
           GL++GP +S       I   L  +    L+Y Y   HL   F+K  TG  K KSL
Sbjct: 92  GLIVGPAISGYLAQVPIFSTLFMYIDLLLRYSY-KLHLAPEFVKQHTGPAKDKSL 145


>08_01_0336 - 2993322-2993711
          Length = 129

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 213 SASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSN--QSAGECSEGKAPTV 386
           SAS   +R A  E+ +   +  S  G R+P     E + P   N    AG       PT 
Sbjct: 42  SASKAVRRPASVESDQPEEVTASRRGERLPDWLVLELSSPQEENPISRAGGVLPRVLPT- 100

Query: 387 DSRSYVALLKELCEEYKLPGVE 452
             R  V L+++L    +LP +E
Sbjct: 101 -PRKLVRLVRQLHRSEELPELE 121


>07_03_1083 -
           23840789-23841634,23841991-23842017,23844401-23844442,
           23844882-23845002,23845824-23846062
          Length = 424

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 300 PPPFATEFTQPSHSNQSAGECSEGK 374
           PPP A EF  P+    +  EC  GK
Sbjct: 60  PPPAAEEFAMPAALRNAVRECGTGK 84


>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
            1178179-1178378,1178505-1178605,1178747-1179369,
            1179451-1179546,1179637-1179798,1179889-1180068,
            1180173-1180323,1180408-1180641,1180753-1180913,
            1181041-1181163,1181261-1181421,1181655-1181877,
            1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +3

Query: 60   KSNNKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKA-------LGESVSA 218
            K+  +M T  T+    + +   +P+Y CV + GP H   F +  +          E +  
Sbjct: 1791 KNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGE 1850

Query: 219  SARSKREAKQEAARAMLLCLS 281
               S ++AK  AA  +L  L+
Sbjct: 1851 PMPSVKKAKDSAAVLLLELLN 1871


>08_02_0519 -
           18097509-18097726,18097803-18097967,18098095-18098305,
           18099151-18099419,18100915-18101017
          Length = 321

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 96  LQEMMMKLG-QIPEYECVAQSGPQHQATFEFRCKALGESVSAS--ARSKREAKQEAAR 260
           LQE + +   Q+P Y C    G  HQ  F+      GE  S++   R  ++A+Q+AA+
Sbjct: 43  LQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAK 99


>01_06_1802 + 39978634-39978880,39979016-39979431
          Length = 220

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 93  VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGES---VSASARSKREAKQEAARA 263
           V++ +   +G  P+       GP  +    FRC+ L  +   V     + R A    ARA
Sbjct: 110 VVERVFYMVGSPPDVITATGEGPGGRTVAGFRCRRLTSTRTLVDGEDAAARAAAISGARA 169

Query: 264 MLLC 275
           +++C
Sbjct: 170 LVMC 173


>02_01_0315 -
           2111095-2111241,2111496-2111579,2111803-2111883,
           2112133-2112310,2112447-2112623,2112688-2112734,
           2112845-2112901,2113339-2113437,2113696-2113818,
           2113895-2114017,2114241-2114264,2115096-2115209,
           2115315-2115503,2115691-2115857,2116846-2116930,
           2117698-2117778,2118239-2118424,2119266-2119314,
           2119777-2119810,2120087-2120153,2120198-2120419
          Length = 777

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 225 VQKQRQTHLKPYSGTQMW 172
           +Q+Q   H+K Y+G+Q+W
Sbjct: 397 MQQQNHNHMKGYNGSQLW 414


>12_01_0361 - 2743355-2744134
          Length = 259

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 226 RAEAETDSPKALQRNSNVAWCWGPD*ATHSYSGICPSFIIISCSTVMGVF 77
           RAE       A    S++ W +  D   H Y  I   +++ISCS  + +F
Sbjct: 154 RAELVIRGAAAEPPLSHLQWQYSIDDIVHQYRVISCKYLVISCSGTLLMF 203


>06_03_1158 -
           28080330-28080647,28080726-28080949,28081213-28081423,
           28081536-28081708,28082093-28082156,28082353-28082514
          Length = 383

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 138 ECVAQSGPQHQATFEFRCKALG-ESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPFA 314
           E + + GP     +   CKALG +++  +A S +   +EA   ++  + T G +  P F+
Sbjct: 118 EHLLRQGPSFFKQYVEECKALGFDTIELNAGSLK-LPEEALLRLVRLIKTSGLQAKPLFS 176

Query: 315 TEF 323
            +F
Sbjct: 177 VKF 179


>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 363 SEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTG--PAHM--RLFSVRASIG 518
           SE  +P   + + + LLK   EE     + Y+L+ D+G  PA M   L S  +++G
Sbjct: 110 SEAASPLDQAVAEIELLKARVEEVSNRNIRYSLINDSGSKPAAMPRHLASAASAVG 165


>02_03_0181 + 16100495-16101025,16101335-16101358
          Length = 184

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 288 GHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVD-SRSYVALLKELCEEYKLPGVEYALV 464
           G R PPP   ++     + ++A   S   AP+ D  +S V  +  LC+  + P     ++
Sbjct: 120 GSRAPPPLRLKWIDGGATAETAAASSRCWAPSSDGGQSRVPPVLPLCQLSRRPPQTPRII 179

Query: 465 ADTG 476
            D G
Sbjct: 180 IDQG 183


>01_06_0866 -
           32572002-32572541,32572806-32572984,32574330-32574430,
           32574554-32574887,32574915-32575037,32575193-32575394,
           32575915-32576097,32576332-32576436,32576553-32576760,
           32577025-32577170,32577321-32577443,32577490-32577698,
           32577931-32578152,32578189-32578198,32578710-32578763,
           32580841-32581052,32581620-32581772,32582071-32582158,
           32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +3

Query: 96  LQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALG---ESVSASARSKREAKQEAARAM 266
           LQE+  +    P       +GP H   F       G    +   +ARS +EA   AA+A 
Sbjct: 6   LQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNIAAKAA 65

Query: 267 LLCLSTIGHRVPPPFATEFTQPSHSNQ 347
              LS++   +PPP      Q S+ +Q
Sbjct: 66  FDHLSSL--PLPPPPPPSENQSSYKSQ 90


>01_01_0888 + 6990354-6991862,6991970-6992431
          Length = 656

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 374 FALGALASRLVTMRGLCKFSSKWWGYT 294
           F   +LA R+   RG  +FS  WW YT
Sbjct: 498 FLYASLAVRINLFRGF-RFSLAWWAYT 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,229
Number of Sequences: 37544
Number of extensions: 242791
Number of successful extensions: 814
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)