Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20) 46 2e-05
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 38 0.004
SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14) 36 0.027
SB_1180| Best HMM Match : DDE (HMM E-Value=5e-08) 31 0.76
SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32) 30 1.0
SB_29078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 28 4.1
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12) 27 7.1
SB_51127| Best HMM Match : DUF680 (HMM E-Value=3.2) 27 7.1
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 7.1
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 27 9.4
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 27 9.4
SB_52213| Best HMM Match : rve (HMM E-Value=5.1e-05) 27 9.4
SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3) 27 9.4
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19) 27 9.4
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 27 9.4
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_35360| Best HMM Match : rve (HMM E-Value=0.014) 27 9.4
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 27 9.4
>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
Length = 918
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +3
Query: 78 KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAA 257
KTPI+ L E+ +++G ++E V+ G H TF CKA + + SK++AKQ AA
Sbjct: 33 KTPISELLELAVQMGIKVDFEQVSAVGMPHNQTFTINCKAGDFTGIGTGPSKKKAKQNAA 92
Query: 258 RAML 269
A L
Sbjct: 93 SATL 96
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 96 LQEMMMKLG-QIPEYECVAQSGPQHQATFE 182
LQE+ +K G Q PEY+ V GP H FE
Sbjct: 128 LQEVTVKKGWQYPEYKDVKAKGPPHMRQFE 157
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 44.0 bits (99), Expect = 8e-05
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +3
Query: 78 KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAA 257
K+ I+ + E+ ++ + +++ + +GP H F+ + K++AK+EAA
Sbjct: 237 KSEISQVYEIATRMKMMVDFQDMENAGPAHMKKFKIKATVGPYMTEGEGNRKKDAKKEAA 296
Query: 258 RAMLLCLSTIGH-RVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEY 434
ML L + V P ++ + N + PT++S +++L ++ +
Sbjct: 297 VKMLAELKKLPEPPVDPEKKKKYQRHGLYNAKKVKPKSDIDPTLNS---ISILGQILQRR 353
Query: 435 KLPGVEYALVADTGPAHMRLFSVRASIG 518
P Y+LV + G + F++R +G
Sbjct: 354 HDPAPVYSLVEERGHMMKKEFTLRVKVG 381
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 78 KTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGE 206
KTPI+++ E+ PEY + ++GP H+ TF+ + K LG+
Sbjct: 4 KTPISLMNELAKANNLNPEYNVIEETGPAHKKTFKVQLK-LGD 45
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 384 VDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIG 518
+ ++ ++L+ EL + L EY ++ +TGPAH + F V+ +G
Sbjct: 1 MSQKTPISLMNELAKANNL-NPEYNVIEETGPAHKKTFKVQLKLG 44
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 78 KTPITVLQEMMM-KLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEA 254
K PI++LQE+ K Q+P+++ + GP H F F+ G S + KQ
Sbjct: 687 KHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNK-KQAK 745
Query: 255 ARAMLLCLSTIG 290
A+ L L IG
Sbjct: 746 AQCALYALKAIG 757
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 333 SHSNQSAGECSEGKAPTVD--SRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVR 506
S + G G P D + +++L+E+C K ++ L+ D GP H + F +
Sbjct: 665 SSGGEKPGNKKPGNRPITDLQGKHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFK 724
Query: 507 ASI 515
++
Sbjct: 725 VAV 727
>SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)
Length = 579
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 132 EYECVAQSGPQHQATFEFRCKALGESV--SASARSKREAKQEAARAMLLCLS 281
EYE +A +GP H + R + +GES +A+A +K++AK+ AA L LS
Sbjct: 396 EYEMLAPAGPSHSPQYSARVR-VGESSFDAATAATKKDAKEFAADLALRALS 446
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 444 GVEYALVADTGPAHMRLFSVRASIG 518
G+EY ++A GP+H +S R +G
Sbjct: 394 GIEYEMLAPAGPSHSPQYSARVRVG 418
>SB_1180| Best HMM Match : DDE (HMM E-Value=5e-08)
Length = 265
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 384 VDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRA 509
+DS + ++E ++ PG ALV D GPAH + + +A
Sbjct: 203 LDSNLFEEWVREQDRSFERPGRNVALVVDNGPAHPTVSNFKA 244
>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
Length = 429
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 363 SEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI 515
S K T + ++ L +L EYK PG+E+ LV+ GP H F V ++
Sbjct: 44 SAKKRKTSSNATFKTPLMQL-NEYK-PGLEFRLVSQEGPPHDTTFVVAVTV 92
>SB_29078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 280 ERHNSMARAASCFASLFDRAEAETDSPKALQRNSNVAW 167
E+H + ARA FAS + EA TD P R+ N W
Sbjct: 21 EQHVNDARAHPPFASWRNSEEARTDRPSQQLRSLNGEW 58
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 345 QSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
Q A +C + + S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 890 QEAQDC-DAICKQLGSTTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 936
>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 222 QKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFLAVLLWEFS 76
+K+R P G +WPG+G + T+E + +L +L FS
Sbjct: 165 KKKRIRSNYPEVGEAVWPGIGGKVVSVVQTIELYTAAMLYLILLTTMFS 213
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +3
Query: 285 IGHRVPPPFATEFTQPSHSNQSAGECSEGK--APTVDSRSYVALLK---ELCEEYKLPGV 449
+GH + PP + T P +N S +C+ GK + ++DS S K E
Sbjct: 190 VGHGLSPPCGSVLTNP--ANHSCVKCAPGKSFSESIDSSSCKPCSKCAVGQMVERACNST 247
Query: 450 EYALVADTGPAHMRLFSVRASI 515
L D P R FSV ++
Sbjct: 248 HDTLCGDCSPGFYRDFSVHPAV 269
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S S A+ + +CE + L G+ +V+D GP ++
Sbjct: 1018 STSSAAVTRHMCEIFALHGIPDKVVSDNGPQYV 1050
>SB_4036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 283 VERHNSMARAASCFASLFDRAEAETDSPKALQRNSNVAW 167
V +H+S A A FAS + EA TD P R+ N W
Sbjct: 116 VIQHDSPADAHPPFASWRNSEEARTDRPSQQLRSLNGEW 154
>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
Length = 1286
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 192 KALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAG 356
K G + S+ K +K+E M C+S+I H+ P T T S + G
Sbjct: 491 KTSGNKLKISSIDKNASKEEEPLKMWQCISSI-HQAKPTNTTALTSKSKIRKGFG 544
>SB_51127| Best HMM Match : DUF680 (HMM E-Value=3.2)
Length = 94
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 289 PIVERHNSMARAASCFASLFDRAEAETDSPKALQRNSNVAW 167
P+ R S+ A FAS + EA TD P R+ N W
Sbjct: 14 PVAAREASIYTAHPPFASWRNSEEARTDRPSQQLRSLNGEW 54
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 381 WALCPRSTRQPIGYYERVV*IQ*QMVGVHGDLL*KDTTAW 262
W L RST++P+ Y+ R + ++G+ G KD+ W
Sbjct: 967 WELVTRSTKKPVFYHIRERTVGVNVIGIRGT---KDSRDW 1003
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 2777 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 2809
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 955 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 987
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 1025 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 1057
>SB_52213| Best HMM Match : rve (HMM E-Value=5.1e-05)
Length = 140
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 58 STTSAAVTRRMCEIFALHGIPDTVVSDNGPQYV 90
>SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3)
Length = 168
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 102 EMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKRE 239
E ++LG++ + V P T RC A+ ++++A R K++
Sbjct: 114 ESRVQLGELLSLKDVPDEEPSRTMTLATRCAAMLDALTAMTRPKKD 159
>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 521 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 553
>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
Length = 1065
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 701 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 733
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 335 RGLCKFSSKWWGYTVTYCRK 276
RG C+ SS+++ Y + CRK
Sbjct: 18 RGFCRPSSQYYNYMIRVCRK 37
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 330 PSHSNQSAG-ECSEGKAPTVDSRSYVALLKELCE 428
PS++ G EC++GKA T S S LLK + E
Sbjct: 301 PSNTPSRHGNECADGKATTSYSHSVTNLLKNIYE 334
>SB_35360| Best HMM Match : rve (HMM E-Value=0.014)
Length = 247
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 188 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 220
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 SRSYVALLKELCEEYKLPGVEYALVADTGPAHM 488
S + A+ + +CE + L G+ +V+D GP ++
Sbjct: 604 STTSAAVTRHMCEIFALHGIPDTVVSDNGPQYV 636
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,029
Number of Sequences: 59808
Number of extensions: 266815
Number of successful extensions: 4508
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4507
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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