Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309C03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical pr... 34 0.071
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 29 2.0
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine rece... 29 2.7
AF016441-8|AAB65913.2| 212|Caenorhabditis elegans Hypothetical ... 28 3.5
Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical p... 28 4.7
AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical ... 28 4.7
AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear recep... 28 4.7
AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear recep... 28 4.7
AF025379-1|AAC14017.1| 602|Caenorhabditis elegans acetylcholine... 28 4.7
U80027-10|AAC48118.3| 295|Caenorhabditis elegans Serpentine rec... 27 6.2
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 27 6.2
>U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical
protein F55A4.5 protein.
Length = 705
Score = 33.9 bits (74), Expect = 0.071
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +3
Query: 69 NKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKAL--GESVSASARSKREA 242
+K K+ I+ + E +L +E + + GP H + RC + G V A A K +
Sbjct: 288 HKQKSVISDIHEKAYQLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKK 347
Query: 243 KQEAAR-AMLLCLSTIGHRVP 302
K+ A + A L+T+ H P
Sbjct: 348 KKSAQQEACTQLLATVEHLTP 368
Score = 32.3 bits (70), Expect = 0.22
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +3
Query: 93 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLL 272
++Q K + P +E VA+ G F + K + +KR AK+ AA AML
Sbjct: 418 LIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAAEAMLE 477
Query: 273 CLSTIGHRVPPPFATEFTQPSHSNQSAGECSE--GKAPTVDSRS 398
+ + +PPP + + + S E S G PT S S
Sbjct: 478 SIGFV-KPLPPPGKSLLKKMIDCDPSLPEISHWTGPPPTAVSVS 520
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 119 KFHHHFLQYCYGSFHLVVRFLKL 51
+F HF+ C G +H++ +F+KL
Sbjct: 1665 EFQKHFIAMCPGLYHMIEKFVKL 1687
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 303 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 199
G+H DLL ++ G+LP L P+ I +KQ + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 303 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 199
G+H DLL ++ G+LP L P+ I +KQ + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916
>Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.10 protein.
Length = 329
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 136 YSGICPSFIIISCSTVMGVFILLLD 62
Y G+C S I++ CST G FI+L D
Sbjct: 142 YIGVCISLIVLVCSTSSG-FIILWD 165
>U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 142 HSYSGICPSFIIISCSTVMGVF 77
H+Y +CPS +I+ S MG+F
Sbjct: 123 HNYRDLCPSILILLFSVFMGMF 144
>AF016441-8|AAB65913.2| 212|Caenorhabditis elegans Hypothetical
protein M03F8.6 protein.
Length = 212
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 113 ETWTDSRV*MCCSVRAPTPGHI 178
+TW D R+ SVR P P HI
Sbjct: 74 QTWRDERLRFVGSVRVPVPSHI 95
>Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical
protein K06B4.11 protein.
Length = 364
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 209 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 292
CL C + +G G++ C A +F+ R+
Sbjct: 23 CLICCEVADGHHFGAAACRACAAFFRRT 50
>AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical
protein Y48B6A.7 protein.
Length = 602
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -3
Query: 279 KDTTAWHGLLPALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFL 100
++ W GL A P+ + R + + G++MW ++E ++ + L
Sbjct: 70 REKKQWRGLYDATKPANACFQTRDNYNTSFWGSEMWNANTQISEDCLYLNIWAPADAYNL 129
Query: 99 AVLLWEF 79
V++W F
Sbjct: 130 TVMVWFF 136
>AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 365
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 209 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 292
CL C + +G G++ C A +F+ R+
Sbjct: 24 CLICCEVADGHHFGAAACRACAAFFRRT 51
>AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 366
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 209 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 292
CL C + +G G++ C A +F+ R+
Sbjct: 25 CLICCEVADGHHFGAAACRACAAFFRRT 52
>AF025379-1|AAC14017.1| 602|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 602
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -3
Query: 279 KDTTAWHGLLPALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFL 100
++ W GL A P+ + R + + G++MW ++E ++ + L
Sbjct: 70 REKKQWRGLYDATKPANACFQTRDNYNTSFWGSEMWNANTQISEDCLYLNIWAPADAYNL 129
Query: 99 AVLLWEF 79
V++W F
Sbjct: 130 TVMVWFF 136
>U80027-10|AAC48118.3| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 5 protein.
Length = 295
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 142 HSYSGICPSFIIISCSTVMGVF--ILLLDF*SLKL 44
H Y +CPS II+ + MG+F ++L F S+ +
Sbjct: 123 HIYRDLCPSIIILLFAITMGMFENLILYIFCSINI 157
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 240 AKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSA 353
AK+ A A LS +GH+ P P A + T P + +A
Sbjct: 1128 AKKPAPSASAHNLSALGHQKPGPTAPKVTAPKPTTSTA 1165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,235,591
Number of Sequences: 27780
Number of extensions: 192743
Number of successful extensions: 559
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -