Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    35   6e-04
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.36 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.36 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.47 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 34.7 bits (76), Expect = 6e-04
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
 Frame = +3

Query: 66  NNKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAK 245
           N + K  +  L E+  K G +  Y+ V Q+GP H   F    +  G++     R+K+ AK
Sbjct: 31  NPQPKNAVCALNEL--KSGAV--YKVVDQTGPTHAPIFTIAVQIDGQTYEGKGRTKKMAK 86

Query: 246 QEAARAML-------------LCLSTIGHRVP--PPFATEFTQPSHSNQSAGECSEGKAP 380
             AA   L               ++T    +P  P F ++ T+  +   +A +    +  
Sbjct: 87  HAAAELALRNIVQFRNTPEVHQAINTCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPK 146

Query: 381 TVD---SRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI 515
             +    +  VAL+ EL      PGV Y  V+D G ++ + F++  +I
Sbjct: 147 NTNKFLEKGPVALINEL-----YPGVVYKCVSDNGESYAK-FTISVTI 188


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 264 WHGLLPA-LLPSLIVQKQRQTHLKPYSGTQMW 172
           WHG+L A +LP+   Q +R  +   + G +MW
Sbjct: 86  WHGVLNATVLPNSCYQ-ERYEYFPGFPGEEMW 116


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 264 WHGLLPA-LLPSLIVQKQRQTHLKPYSGTQMW 172
           WHG+L A +LP+   Q +R  +   + G +MW
Sbjct: 86  WHGVLNATVLPNSCYQ-ERYEYFPGFPGEEMW 116


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 392 TVHCGRFALGA-LASRLVTMRGLCKFSSKWWGYTVTYC 282
           +V C  F  G  L     T   +C++   WW Y +  C
Sbjct: 136 SVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNC 173


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 512 AGAHAEQAHVRGP 474
           AG H   AH+RGP
Sbjct: 18  AGGHGFDAHLRGP 30


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 512 AGAHAEQAHVRGP 474
           AG H   AH+RGP
Sbjct: 18  AGGHGFDAHLRGP 30


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 302 GYTVTYCRKTQQHGTGC 252
           G+T+T   KT+   TGC
Sbjct: 813 GFTMTKSGKTRHQNTGC 829


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 222 ARSKREAKQEAARAMLLCLSTIGHRVPP 305
           A   ++ +Q   R   LC+ TIG ++ P
Sbjct: 256 AEEYKKIQQILIRMNKLCIQTIGGQIKP 283


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -3

Query: 204 HLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFLAVLL 88
           H +     Q W  + +L E H+H  + +++       LL
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIPEGAFQPLL 116


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 300 PPPFATEFTQPSHSNQSAGECSEGKAPTVDSR-SYVAL----LKELCE 428
           PP  A +FT         G+ S G  P +D   +++A     +KE C+
Sbjct: 333 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCD 380


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 117 VSSSFLAVLLWEFSSC 70
           V  S   VLLW+F  C
Sbjct: 106 VHESLKNVLLWDFQEC 121


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 300 PPPFATEFTQPSHSNQSAGECSEGKAPTVDSR-SYVAL----LKELCE 428
           PP  A +FT         G+ S G  P +D   +++A     +KE C+
Sbjct: 333 PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCD 380


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 300 PPPFATEFTQPSHSNQSAGECSEGKAPTVDSR-SYVAL----LKELCE 428
           PP  A +FT         G+ S G  P +D   +++A     +KE C+
Sbjct: 44  PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCD 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,686
Number of Sequences: 438
Number of extensions: 2353
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)