BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS309C03f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g14120.2 68416.m01786 expressed protein similar to Nuclear po... 33 0.088 At3g14120.1 68416.m01785 expressed protein similar to Nuclear po... 33 0.088 At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 33 0.15 At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 33 0.15 At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR... 32 0.20 At4g01290.1 68417.m00170 expressed protein 30 0.82 At3g59830.1 68416.m06676 ankyrin protein kinase, putative simila... 29 2.5 At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 29 2.5 At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid... 28 4.4 At3g12500.1 68416.m01556 basic endochitinase identical to basic ... 28 4.4 At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 27 7.7 At1g09550.1 68414.m01071 pectinacetylesterase, putative similar ... 27 7.7 >At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus norvegicus] Length = 1077 Score = 33.5 bits (73), Expect = 0.088 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -3 Query: 222 QKQRQTHLKPYSGTQMWPGVGALTEQ-HIHTLESVQVSSSFLAVL-LWEFSSCC 67 Q R L P+SG M+P + AL + TL++++ S F L LW+++S C Sbjct: 344 QSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQESGFGNQLRLWKWASYC 397 >At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus norvegicus] Length = 1101 Score = 33.5 bits (73), Expect = 0.088 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -3 Query: 222 QKQRQTHLKPYSGTQMWPGVGALTEQ-HIHTLESVQVSSSFLAVL-LWEFSSCC 67 Q R L P+SG M+P + AL + TL++++ S F L LW+++S C Sbjct: 344 QSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQESGFGNQLRLWKWASYC 397 >At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsRBD)-containing protein weak similarity to SP|P19525 Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.1.-) {Homo sapiens}; contains Pfam profile PF00035: Double-stranded RNA binding motif Length = 355 Score = 32.7 bits (71), Expect = 0.15 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 93 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARAML 269 +LQE+ K + + A SGP H TF + G+ S A++K+ A+ AA+ Sbjct: 86 LLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAF 145 Query: 270 LCL 278 + + Sbjct: 146 MSI 148 >At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsRBD)-containing protein weak similarity to SP|P19525 Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.1.-) {Homo sapiens}; contains Pfam profile PF00035: Double-stranded RNA binding motif Length = 355 Score = 32.7 bits (71), Expect = 0.15 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 93 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARAML 269 +LQE+ K + + A SGP H TF + G+ S A++K+ A+ AA+ Sbjct: 86 LLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAF 145 Query: 270 LCL 278 + + Sbjct: 146 MSI 148 >At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsRBD)-containing protein contains Pfam profile PF00035: Double-stranded RNA binding motif Length = 301 Score = 32.3 bits (70), Expect = 0.20 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Frame = +3 Query: 93 VLQEMMMKLG-QIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARA 263 +LQE + G +P Y V +SGP H TF + G S + SA++K++A++ AA A Sbjct: 33 LLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIA 90 >At4g01290.1 68417.m00170 expressed protein Length = 991 Score = 30.3 bits (65), Expect = 0.82 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +3 Query: 276 LSTIGHRVPPP-FATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGVE 452 LS R PPP T PS + +AGE GK+ T+++ A + EL + P Sbjct: 630 LSATERRPPPPSMKTTTPPPSVKSTTAGEADPGKSLTLENLFGSAFMNEL-QSIGEPVSG 688 Query: 453 YALVADTGPAHMR 491 A+V+D +R Sbjct: 689 RAMVSDAPGVPLR 701 >At3g59830.1 68416.m06676 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674 Length = 477 Score = 28.7 bits (61), Expect = 2.5 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Frame = +3 Query: 360 CSEGKAPTV--DSRSYVALLKELCEE 431 C EGK PT+ S+SY LKEL EE Sbjct: 411 CIEGKRPTIRTKSKSYPPELKELIEE 436 >At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 1909 Score = 28.7 bits (61), Expect = 2.5 Identities = 30/139 (21%), Positives = 53/139 (38%) Frame = +3 Query: 84 PITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARA 263 P+ LQE + + EY+ ++SG + AT E + V+ + + K K A A Sbjct: 1734 PVRELQERCQQQAEGLEYKA-SRSG--NTATVEVFIDGVQVGVAQNPQKKMAQKLAARNA 1790 Query: 264 MLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLP 443 L+ + + + ++ + GE G L ++C P Sbjct: 1791 ----LAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWP 1846 Query: 444 GVEYALVADTGPAHMRLFS 500 Y V + GPAH + F+ Sbjct: 1847 MPSYRCVKEGGPAHAKRFT 1865 Score = 28.3 bits (60), Expect = 3.3 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Frame = +3 Query: 60 KSNNKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKA-------LGESVSA 218 K+ ++ T T+ + K +P Y CV + GP H F F + E + Sbjct: 1825 KNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGE 1884 Query: 219 SARSKREAKQEAARAMLLCLS 281 S ++AK AA +L L+ Sbjct: 1885 PMPSVKKAKDSAAVLLLELLN 1905 >At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid transport family protein weak similarity to SP|P25396 Tellurite resistance protein tehA. {Escherichia coli}; contains Pfam profile PF03595: C4-dicarboxylate transporter/malic acid transport protein Length = 635 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 374 FALGALASRLVTMRGLCKFSSKWWGYT 294 F +LA R+ RG+ KFS WW YT Sbjct: 491 FLYFSLAVRINFFRGI-KFSLSWWAYT 516 >At3g12500.1 68416.m01556 basic endochitinase identical to basic endochitinase precursor SP:P19171 from [Arabidopsis thaliana] Length = 322 Score = 27.9 bits (59), Expect = 4.4 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = -1 Query: 401 IAATVHCGRFALGALASRLVTMRGLCKFSSKWWGYTVTYCRKTQQHGTGCFLLCFP 234 +++ CGR A GAL GLC W G T YC++ GC C P Sbjct: 17 LSSAEQCGRQAGGALCPN-----GLCCSEFGWCGNTEPYCKQ-----PGCQSQCTP 62 >At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to CAF protein [Arabidopsis thaliana] GI:6102610; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF03368: Domain of unknown function, PF00636: RNase3 domain, PF00035: Double-stranded RNA binding motif Length = 1676 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Frame = +3 Query: 129 PEYECVAQSGPQHQATFEFRC--------KALGESVSASARSKREAKQEAARAMLLCLST 284 P +EC + GP H +F ++ E + +K+ A + AA+A + CL Sbjct: 1612 PHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKH 1671 Query: 285 IG 290 G Sbjct: 1672 SG 1673 >At1g09550.1 68414.m01071 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata] Length = 388 Score = 27.1 bits (57), Expect = 7.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +3 Query: 69 NKMKTPITVLQEMM--MKLGQIPEYECVAQSGPQHQATFEFRCKA 197 N++KTP+ +L ++G +SG H +F FRC A Sbjct: 269 NQVKTPLFILNSGFDSWQIGNSLAPPSADKSGSWHNCSFSFRCTA 313 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,693,032 Number of Sequences: 28952 Number of extensions: 178866 Number of successful extensions: 607 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 588 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 607 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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