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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14120.2 68416.m01786 expressed protein similar to Nuclear po...    33   0.088
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po...    33   0.088
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR...    33   0.15 
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR...    33   0.15 
At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR...    32   0.20 
At4g01290.1 68417.m00170 expressed protein                             30   0.82 
At3g59830.1 68416.m06676 ankyrin protein kinase, putative simila...    29   2.5  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    29   2.5  
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    28   4.4  
At3g12500.1 68416.m01556 basic endochitinase identical to basic ...    28   4.4  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    27   7.7  
At1g09550.1 68414.m01071 pectinacetylesterase, putative similar ...    27   7.7  

>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1077

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 222 QKQRQTHLKPYSGTQMWPGVGALTEQ-HIHTLESVQVSSSFLAVL-LWEFSSCC 67
           Q  R   L P+SG  M+P + AL +     TL++++  S F   L LW+++S C
Sbjct: 344 QSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQESGFGNQLRLWKWASYC 397


>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1101

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 222 QKQRQTHLKPYSGTQMWPGVGALTEQ-HIHTLESVQVSSSFLAVL-LWEFSSCC 67
           Q  R   L P+SG  M+P + AL +     TL++++  S F   L LW+++S C
Sbjct: 344 QSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQESGFGNQLRLWKWASYC 397


>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 93  VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARAML 269
           +LQE+  K   +  +   A SGP H  TF    +  G+  S   A++K+ A+  AA+   
Sbjct: 86  LLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAF 145

Query: 270 LCL 278
           + +
Sbjct: 146 MSI 148


>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 93  VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARAML 269
           +LQE+  K   +  +   A SGP H  TF    +  G+  S   A++K+ A+  AA+   
Sbjct: 86  LLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAF 145

Query: 270 LCL 278
           + +
Sbjct: 146 MSI 148


>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 301

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 93  VLQEMMMKLG-QIPEYECVAQSGPQHQATFEFRCKALGESVSA-SARSKREAKQEAARA 263
           +LQE   + G  +P Y  V +SGP H  TF    +  G S +  SA++K++A++ AA A
Sbjct: 33  LLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIA 90


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 276 LSTIGHRVPPP-FATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGVE 452
           LS    R PPP   T    PS  + +AGE   GK+ T+++    A + EL +    P   
Sbjct: 630 LSATERRPPPPSMKTTTPPPSVKSTTAGEADPGKSLTLENLFGSAFMNEL-QSIGEPVSG 688

Query: 453 YALVADTGPAHMR 491
            A+V+D     +R
Sbjct: 689 RAMVSDAPGVPLR 701


>At3g59830.1 68416.m06676 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 477

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 360 CSEGKAPTV--DSRSYVALLKELCEE 431
           C EGK PT+   S+SY   LKEL EE
Sbjct: 411 CIEGKRPTIRTKSKSYPPELKELIEE 436


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
            identical to RNA helicase/RNAseIII CAF protein
            GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 30/139 (21%), Positives = 53/139 (38%)
 Frame = +3

Query: 84   PITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARA 263
            P+  LQE   +  +  EY+  ++SG  + AT E     +   V+ + + K   K  A  A
Sbjct: 1734 PVRELQERCQQQAEGLEYKA-SRSG--NTATVEVFIDGVQVGVAQNPQKKMAQKLAARNA 1790

Query: 264  MLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLP 443
                L+ +  +       +     ++ +  GE   G             L ++C     P
Sbjct: 1791 ----LAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWP 1846

Query: 444  GVEYALVADTGPAHMRLFS 500
               Y  V + GPAH + F+
Sbjct: 1847 MPSYRCVKEGGPAHAKRFT 1865



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
 Frame = +3

Query: 60   KSNNKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKA-------LGESVSA 218
            K+ ++  T  T+    + K   +P Y CV + GP H   F F  +          E +  
Sbjct: 1825 KNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGE 1884

Query: 219  SARSKREAKQEAARAMLLCLS 281
               S ++AK  AA  +L  L+
Sbjct: 1885 PMPSVKKAKDSAAVLLLELLN 1905


>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 374 FALGALASRLVTMRGLCKFSSKWWGYT 294
           F   +LA R+   RG+ KFS  WW YT
Sbjct: 491 FLYFSLAVRINFFRGI-KFSLSWWAYT 516


>At3g12500.1 68416.m01556 basic endochitinase identical to basic
           endochitinase precursor SP:P19171 from [Arabidopsis
           thaliana]
          Length = 322

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -1

Query: 401 IAATVHCGRFALGALASRLVTMRGLCKFSSKWWGYTVTYCRKTQQHGTGCFLLCFP 234
           +++   CGR A GAL        GLC     W G T  YC++      GC   C P
Sbjct: 17  LSSAEQCGRQAGGALCPN-----GLCCSEFGWCGNTEPYCKQ-----PGCQSQCTP 62


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = +3

Query: 129  PEYECVAQSGPQHQATFEFRC--------KALGESVSASARSKREAKQEAARAMLLCLST 284
            P +EC  + GP H  +F ++             E    +  +K+ A + AA+A + CL  
Sbjct: 1612 PHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKH 1671

Query: 285  IG 290
             G
Sbjct: 1672 SG 1673


>At1g09550.1 68414.m01071 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 388

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 69  NKMKTPITVLQEMM--MKLGQIPEYECVAQSGPQHQATFEFRCKA 197
           N++KTP+ +L       ++G         +SG  H  +F FRC A
Sbjct: 269 NQVKTPLFILNSGFDSWQIGNSLAPPSADKSGSWHNCSFSFRCTA 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,032
Number of Sequences: 28952
Number of extensions: 178866
Number of successful extensions: 607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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