Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    30   1.3  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   3.0  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    28   4.0  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   4.0  
03_05_0777 + 27636342-27637115                                         28   4.0  
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395...    28   5.2  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    27   6.9  

>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 358 FDPLHYIQREGHLCGSQGEG 417
           ++ +  IQREGHLCG  G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 277 MGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           M LSL +PS  T    + V +F TDG  +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 290 YPFPQSRLVLIICVSSYFILMGILTLYTTFKE 385
           YPF    L++ IC S +     ILTLYT +K+
Sbjct: 453 YPFLFDALMMFICFSQFV----ILTLYTNYKQ 480


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 107 EAAKINKWDGAAAKNAVDDAIREVMTG 187
           EAA+  K +   AKN+  DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 101 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 217
           TAEAA++ +W   A  + VD A R  +  D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168


>03_05_0710 +
           27038709-27038865,27039205-27039346,27039383-27039558,
           27039639-27039703,27040000-27040371,27040429-27040504,
           27040505-27040571,27040672-27040825,27041122-27041289,
           27041392-27041502,27041612-27041722,27041864-27041881,
           27041917-27042018,27042587-27042817,27043390-27043464,
           27043744-27043815,27044597-27044782,27044868-27045026,
           27045251-27045343,27045730-27045801,27046336-27046426,
           27046669-27046847,27047252-27047333,27047526-27047636,
           27047715-27047821,27048194-27048271,27048357-27048452,
           27048627-27048722,27048839-27048856
          Length = 1154

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 274 AMGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHYIQR 384
           A  LSL +P  +TG++  C +I  +  ++  +H++++
Sbjct: 282 ANDLSLRLPLFETGNSDDCYVIMKSSCWYGYIHWVKK 318


>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 371  TTFKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGN 514
            TTF E   ++ A+    + T VW    ++    D++   I++  T G+
Sbjct: 2458 TTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGD 2505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,802
Number of Sequences: 37544
Number of extensions: 269289
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)