Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)                 29   1.8  
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)               28   4.1  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   4.1  
SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   27   7.1  
SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7)                     27   9.4  

>SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 116 KINKWDGAAAKNAVDDAIRE 175
           K++KWDG A KNA+DDA ++
Sbjct: 38  KVDKWDGNAVKNALDDAAKK 57


>SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)
          Length = 384

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 281 DYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEK 415
           ++LYP  Q  L +II + + F+ + +L +   FK+  IF V ++K
Sbjct: 174 EFLYPTGQIELGVIILICTLFVAIPLLVILFCFKK--IFRVTRDK 216


>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
          Length = 454

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 511 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLFECS 371
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 349 SLKNTYSNVKIIFLPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 395


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 511 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLFECS 371
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 124 SLKNTYSNIKIIFLPKNTASKTQPLDSGIIANWKIHYKKRMLRFICS 170


>SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 511 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLFECS 371
           +++ +++N +I+F       +T   D G+I+N  + Y K  L F CS
Sbjct: 101 SLKNTYSNIKIIFFPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 147


>SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 265

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 511 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLFECS 371
           +++ +++N +I+F       +T   D G+I+N  + Y K  L F CS
Sbjct: 101 SLKNTYSNIKIIFFPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 147


>SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7)
          Length = 140

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 520 TSVAIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGY 401
           TS  +RV H N  I    V  +  T FPD G +S +  GY
Sbjct: 3   TSKMLRV-HKNVPIPSFYVMTHQETRFPDKGQLSEIGGGY 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,903
Number of Sequences: 59808
Number of extensions: 312520
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)