Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   102   2e-22
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    31   0.66 
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    29   2.7  
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    29   2.7  
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    29   2.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.7  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  102 bits (244), Expect = 2e-22
 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +2

Query: 101 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 277
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 278 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 457
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 458 KKHDDKYNL 484
           K HDDKY L
Sbjct: 122 KAHDDKYTL 130


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 521 HECCHSCLA*QLRDCIYRRVSLHKNWLPRPW 429
           HE  HS L  QL+  +  R   HKNWL   W
Sbjct: 46  HEFQHSELGAQLQSALENRAKNHKNWLEDWW 76


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 343 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQH 516
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKH 117


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 343 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQH 516
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKH 117


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 343 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQH 516
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKH 117


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 262  PLRTAMGL-SLSIPSIKTGSNHLC 330
            PL+  +GL S S+PS++TG+  LC
Sbjct: 1100 PLKCYVGLYSTSVPSLQTGAEQLC 1123


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 262  PLRTAMGL-SLSIPSIKTGSNHLC 330
            PL+  +GL S S+PS++TG+  LC
Sbjct: 1100 PLKCYVGLYSTSVPSLQTGAEQLC 1123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,949
Number of Sequences: 27780
Number of extensions: 228618
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)