Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 485  RDCIYRRVSLHKNWLPRPWCYFQPSPWLP-QRCP 387
            R  + R +  H  W PR   Y + +   P +RCP
Sbjct: 1669 RGTVIRSIRSHSTWDPRRHMYEELNHCAPNRRCP 1702


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 KEKVGNNTRVWEASS 451
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 KEKVGNNTRVWEASS 451
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 86  YNMSETAEAAKINKWDGAAAKNAVDDAIREVMTGDLK 196
           + + E     +IN  D    +N  D  ++ ++TGD K
Sbjct: 119 HELKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEK 155


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 KEKVGNNTRVWEASS 451
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 135 PSHLLIFAASAVSDMLYILK 76
           P+ ++  A S+VSD LY+L+
Sbjct: 406 PTSVIQAATSSVSDDLYLLE 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,253
Number of Sequences: 438
Number of extensions: 3114
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)