Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309C01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa subu...    38   0.004
At1g51870.1 68414.m05847 protein kinase family protein contains ...    30   1.1  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    30   1.1  
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    29   2.5  
At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protei...    29   2.5  
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put...    28   3.3  
At1g51880.1 68414.m05848 leucine-rich repeat protein kinase, put...    28   3.3  
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    28   4.4  
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put...    28   4.4  
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put...    28   4.4  
At1g51805.1 68414.m05838 leucine-rich repeat protein kinase, put...    27   5.8  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    27   7.7  

>At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa
           subunit, putative (SPC25) identical to Probable
           microsomal signal peptidase 25 kDa subunit (EC 3.4.-.-)
           (SPase 25 kDa subunit) (SPC25) (Swiss-Prot:P58684)
           [Arabidopsis thaliana]; contains non-consensus AT-AC
           splice sites; contains 1 transmembrane domain;
          Length = 192

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
 Frame = +2

Query: 95  SETAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXX 274
           S      K N  D  + K+ +D+++ +++T     KE   L + +L              
Sbjct: 8   STNKNVKKANLLDHHSIKHILDESVSDIVTSR-GYKEDVRLSNLKLILGTIIIVVALVAQ 66

Query: 275 XWDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRV-WEASS 451
              Y   FP++R  LI C++ Y +L  +L L    KEK   +      G+ T      SS
Sbjct: 67  F--YNKKFPENRDFLIGCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSS 124

Query: 452 YVKKHDDKYNLVIVMRD 502
            + +  D+Y L I   D
Sbjct: 125 KLPRFSDQYTLTIDSAD 141


>At1g51870.1 68414.m05847 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 837

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 256 CGPLRTAMGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           CG      GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 667 CGAKLADFGLSRSFPI--DGECHVSTVVAGTPGYLDPEYY 704


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 256 CGPLRTAMGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           CG      GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 720 CGAKLADFGLSRSFPI--DGECHVSTVVAGTPGYLDPEYY 757


>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 290 YPFPQSRLVLIICVSSYFILMGILTLYT 373
           YPF    L++I+C  SYFI+    T YT
Sbjct: 489 YPFLFEALIMILCF-SYFIMFAFYTNYT 515


>At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protein
           contains InterPro entry IPR006153: Sodium/hydrogen
           exchanger
          Length = 815

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 278 WDYLYPFPQSRLVLIICVSSYFIL 349
           WDY  P  +S +VL++C+  +F L
Sbjct: 61  WDYSLPHLESVIVLVLCLWQFFYL 84


>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G +H+  ++  T GY DP +Y
Sbjct: 726 GLSRSFPV--DGESHVMTVVAGTPGYLDPEYY 755


>At1g51880.1 68414.m05848 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G +H+  ++  T GY DP +Y
Sbjct: 718 GLSRSFPV--DGESHVSTVVAGTPGYLDPEYY 747


>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 732 GLSRSFPI--GGETHISTVVAGTPGYLDPEYY 761


>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 718 GLSRSFPI--EGETHVSTVVAGTPGYLDPEYY 747


>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 865

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 703 GLSRSFPI--EGETHVSTVVAGTPGYLDPEYY 732


>At1g51805.1 68414.m05838 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 GLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 375
           GLS S P    G  H+  ++  T GY DP +Y
Sbjct: 722 GLSRSFPI--GGETHVSTVVAGTPGYLDPEYY 751


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 313 GSNHLCVIIFHTDGYFDPLHYIQRE 387
           G++H+  I+  T GY DP +YI ++
Sbjct: 758 GTSHVSSIVRGTVGYLDPEYYISQQ 782


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,688
Number of Sequences: 28952
Number of extensions: 214644
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)