Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 289 2e-79
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 286 2e-78
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 124 6e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 4e-17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.56
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.73
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 3.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 5.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 5.2
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 5.2
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 6.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 6.8
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 9.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 289 bits (709), Expect = 2e-79
Identities = 128/171 (74%), Positives = 147/171 (85%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
DIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++S
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAISXNW 515
+RTIQFVDWCPTGFK+GI Y+PP VPG +AKV R VCML NTT+I+ W
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAW 392
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 286 bits (701), Expect = 2e-78
Identities = 127/171 (74%), Positives = 146/171 (85%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
DIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++S
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAISXNW 515
KRTIQFVDWCPTGFK+GI +PP + G ++AKV R VCML NTT+I+ W
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAW 388
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 124 bits (300), Expect = 6e-30
Identities = 54/142 (38%), Positives = 86/142 (60%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ +
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 366 RTIQFVDWCPTGFKVGINYQPP 431
+ FV+W P + PP
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 82.2 bits (194), Expect = 4e-17
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Frame = +3
Query: 9 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 182
+ PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280
Query: 183 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATI 356
E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++ I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
Query: 357 KTKRTIQFVDWCPTGFKVGINYQPPTV 437
+ +R F+ W P +V ++ + P +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYI 367
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.10
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 103 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NNFPSPRSQTHASSPPTRW*NATPV 276
TS S L+ + +++ T S+ P PT+ + +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 277 MASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 432
++ CT TS P T + S P +N +T S TS P
Sbjct: 441 TSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 30.3 bits (65), Expect = 0.18
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +1
Query: 112 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTW 291
S+ + + TPV++S++ T SS P T P + T+ ++ + +TPV ++
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 292 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 426
CT TS P T P S ++ S++ PV+ + TTS
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 27.9 bits (59), Expect = 0.97
Identities = 27/107 (25%), Positives = 47/107 (43%)
Frame = +1
Query: 106 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMAS 285
+P+ T TP++T++ T +S+P T +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466
Query: 286 TWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 426
CT TS P T + S P +N +T S TS
Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 25.4 bits (53), Expect = 5.2
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 136 TPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 315
TP++T++ T +S+P T +P + T+ ++ + +TPV +S + T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522
Query: 316 TSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 426
TS P T + + SVL S+ P++ + TTS
Sbjct: 523 TSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 310 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 444
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = +1
Query: 178 SLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 357
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 358 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 447
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 310 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 444
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 313 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 447
V S P+ P +P PSV + V P + SV P PE
Sbjct: 541 VPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 0.56
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -1
Query: 350 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 171
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 170 RVRDQWEVDTGVR 132
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 222 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 347
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.97
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +1
Query: 145 STSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 324
STS + T SS RP ++ S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 325 PRM*TRPSLPSKPSVLSNSST 387
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 109 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTR 255
P+++ P S + T +SS+P P N PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 346 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 432
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 327 WVRRHHGTAYSKPCTCHDGG 268
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 172 QSSLPRRPTMNNFPSPRSQTHASSPPTR 255
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 343 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 438
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 133 LTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMAS 285
LTP + S +S + +S +R ++N PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +1
Query: 139 PVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 318
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 319 SYPRM*TRPSLPSKPSVLSNSSTG 390
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 325 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 435
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 265 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 444
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 106 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSP 246
SPS LT L S++ S + + + R+ T ++ SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 282 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 461
++ + Y + KDVN + TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 462 VQR 470
VQR
Sbjct: 200 VQR 202
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 90 ALNVDLTEFQTNLVPYPRIHFPLVT 164
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 512 IXGDGGGVXQHADXTLNLGQVASGH 438
I GDGGG+ ++ + LN ++ H
Sbjct: 139 ISGDGGGMVKYFEPNLNNVKIVQAH 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,282
Number of Sequences: 5004
Number of extensions: 50870
Number of successful extensions: 218
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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