Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 318 1e-87
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 318 1e-87
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 318 2e-87
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 318 2e-87
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 317 3e-87
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 317 3e-87
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 303 6e-83
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 120 6e-28
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 119 1e-27
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 117 4e-27
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 117 6e-27
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 117 6e-27
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 117 6e-27
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 116 7e-27
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 116 7e-27
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 113 7e-26
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 80 8e-16
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 79 2e-15
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.022
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.15
At2g40070.1 68415.m04923 expressed protein 32 0.20
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.47
At3g08670.1 68416.m01007 expressed protein 30 0.82
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 0.82
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 28 3.3
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 3.3
At2g15020.1 68415.m01710 expressed protein and genefinder 28 3.3
At1g68080.1 68414.m07777 expressed protein 28 3.3
At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger) fa... 28 4.4
At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger) fa... 28 4.4
At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger) fa... 28 4.4
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 5.8
At1g62870.1 68414.m07099 expressed protein 27 7.7
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 318 bits (781), Expect = 1e-87
Identities = 140/168 (83%), Positives = 158/168 (94%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N+T+++
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 318 bits (781), Expect = 1e-87
Identities = 140/168 (83%), Positives = 158/168 (94%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N+T+++
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 318 bits (780), Expect = 2e-87
Identities = 140/167 (83%), Positives = 157/167 (94%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 366 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
RTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N+T+++
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 318 bits (780), Expect = 2e-87
Identities = 140/167 (83%), Positives = 157/167 (94%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 366 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
RTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N+T+++
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 317 bits (779), Expect = 3e-87
Identities = 141/168 (83%), Positives = 154/168 (91%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N TA++
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVA 385
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 317 bits (779), Expect = 3e-87
Identities = 141/168 (83%), Positives = 154/168 (91%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+ N TA++
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVA 385
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 303 bits (743), Expect = 6e-83
Identities = 133/168 (79%), Positives = 149/168 (88%)
Frame = +3
Query: 3 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 182
DIERPTY+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 362
+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK
Sbjct: 278 SAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKA 337
Query: 363 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLXNTTAIS 506
KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQR VCM+ N TA++
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVA 385
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 120 bits (289), Expect = 6e-28
Identities = 53/143 (37%), Positives = 83/143 (58%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K
Sbjct: 278 GSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNK 337
Query: 366 RTIQFVDWCPTGFKVGINYQPPT 434
+ FV+W P K + PPT
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPPT 360
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 119 bits (286), Expect = 1e-27
Identities = 53/142 (37%), Positives = 82/142 (57%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K
Sbjct: 278 GSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNK 337
Query: 366 RTIQFVDWCPTGFKVGINYQPP 431
+ FV+W P K + PP
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPP 359
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 117 bits (282), Expect = 4e-27
Identities = 51/143 (35%), Positives = 82/143 (57%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
+ P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNK 336
Query: 366 RTIQFVDWCPTGFKVGINYQPPT 434
+ FV+W P K + PPT
Sbjct: 337 NSSYFVEWIPNNVKSTVCDIPPT 359
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (281), Expect = 6e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +3
Query: 15 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 194
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 195 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 374
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 375 QFVDWCPTGFKVGINYQPPT 434
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (281), Expect = 6e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +3
Query: 15 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 194
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 195 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 374
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 375 QFVDWCPTGFKVGINYQPPT 434
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 117 bits (281), Expect = 6e-27
Identities = 52/143 (36%), Positives = 81/143 (56%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNK 336
Query: 366 RTIQFVDWCPTGFKVGINYQPPT 434
+ FV+W P K + PT
Sbjct: 337 NSSYFVEWIPNNVKSSVCDIAPT 359
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 116 bits (280), Expect = 7e-27
Identities = 51/137 (37%), Positives = 79/137 (57%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 185
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 186 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNK 336
Query: 366 RTIQFVDWCPTGFKVGI 416
+ FV+W P K +
Sbjct: 337 NSSYFVEWIPNNVKSSV 353
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 116 bits (280), Expect = 7e-27
Identities = 51/140 (36%), Positives = 81/140 (57%)
Frame = +3
Query: 15 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 194
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 195 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 374
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 375 QFVDWCPTGFKVGINYQPPT 434
FV+W P K + PPT
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT 359
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 113 bits (272), Expect = 7e-26
Identities = 48/134 (35%), Positives = 78/134 (58%)
Frame = +3
Query: 15 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 194
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 195 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 374
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 375 QFVDWCPTGFKVGI 416
FV+W P K +
Sbjct: 340 YFVEWIPNNVKSSV 353
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 80.2 bits (189), Expect = 8e-16
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 182
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 347
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 348 ATIKTKRTIQFVDWCPTGFKVGINYQPPTV 437
I+ ++ + F+DW P +V ++ + P V
Sbjct: 340 QRIRERKLVNFIDWGPASIQVALSKKSPYV 369
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 78.6 bits (185), Expect = 2e-15
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Frame = +3
Query: 6 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 182
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 183 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 347
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 348 ATIKTKRTIQFVDWCPTGFKVGINYQPPTV 437
I+ ++ + F++W P +V ++ + P V
Sbjct: 340 QRIRERKLVNFIEWGPASIQVALSKKSPYV 369
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 59 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 193
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 344 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 237
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.3 bits (70), Expect = 0.20
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +1
Query: 136 TPVSTS-HWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 312
TP+S S S +R + +PT + S S T S+P T +A P ++T L+ T
Sbjct: 236 TPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTR-STPSTTTKSAGPSRSTTPLSRS-TA 293
Query: 313 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPV-SRSVSTTSHPP 435
+S P +RP+LP ++ +S+ +P+ S S +TT+ P
Sbjct: 294 RSSTPT--SRPTLPPSKTISRSSTPTRRPIASASAATTTANP 333
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 93 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 233
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 30.3 bits (65), Expect = 0.82
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +1
Query: 103 TSPSSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNNFPSPRSQTHASSPPTRW*NATPV 276
+SPSSR + P + + S +SS P RP ++ +++ SS P +TP
Sbjct: 194 SSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRP-----STPT 248
Query: 277 MASTWLAVCCTVVTSYPRM*TRPSLPSK--PSVLSNSSTGVQPVS 405
A ++ S P +RPS P++ PS S S+T +S
Sbjct: 249 SRPQLSASSPNIIASRPN--SRPSTPTRRSPSSTSLSATSGPTIS 291
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 0.82
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 425 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 321
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 28.3 bits (60), Expect = 3.3
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Frame = +1
Query: 103 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMN------NFPSPRSQTHASSPP----T 252
+ PSSR T + + S+ R SS+P++ T + SP+ S P T
Sbjct: 107 SDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRKT 166
Query: 253 RW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLP-SKPSVLSNSSTGVQPVSRSVSTTSH 429
+TP ST + + T+ +R P +KP + +N+S+ RS S TS
Sbjct: 167 PSPTSTPSRISTTTSTTPSFKTAGDAQRSRSLTPRAKPQIAANASSRTN--VRSSSVTSR 224
Query: 430 P 432
P
Sbjct: 225 P 225
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 309 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 452
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 87 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 263
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 383 DELDSTLGFDGSDGRVHILGYDVTTVQ 303
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 27.9 bits (59), Expect = 4.4
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +1
Query: 136 TPVSTSHWSRTRQSS---LPR---RPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLA 297
TP S+S R + S LP+ +P +N + Q +A SPP A+ + S L+
Sbjct: 91 TPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS-ISRSLSLS 149
Query: 298 VCCTVVTSYPRM*TRPSLPSKPSVLSNSST 387
T PR+ SLP P +LSNS +
Sbjct: 150 KLFT-----PRIKRTSSLPVTPVILSNSES 174
>At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 494
Score = 27.9 bits (59), Expect = 4.4
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +1
Query: 136 TPVSTSHWSRTRQSS---LPR---RPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLA 297
TP S+S R + S LP+ +P +N + Q +A SPP A+ + S L+
Sbjct: 91 TPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS-ISRSLSLS 149
Query: 298 VCCTVVTSYPRM*TRPSLPSKPSVLSNSST 387
T PR+ SLP P +LSNS +
Sbjct: 150 KLFT-----PRIKRTSSLPVTPVILSNSES 174
>At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 27.9 bits (59), Expect = 4.4
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +1
Query: 136 TPVSTSHWSRTRQSS---LPR---RPTMNNFPSPRSQTHASSPPTRW*NATPVMASTWLA 297
TP S+S R + S LP+ +P +N + Q +A SPP A+ + S L+
Sbjct: 91 TPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS-ISRSLSLS 149
Query: 298 VCCTVVTSYPRM*TRPSLPSKPSVLSNSST 387
T PR+ SLP P +LSNS +
Sbjct: 150 KLFT-----PRIKRTSSLPVTPVILSNSES 174
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 103 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNNFPSPRSQTHASSPPTRW*NATPVM 279
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 280 AS 285
S
Sbjct: 142 VS 143
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 118 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNNFPSPRSQTHASSPP 249
R + C S S+ SRT L R P N+ P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,339
Number of Sequences: 28952
Number of extensions: 296332
Number of successful extensions: 1039
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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