Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B09f
         (347 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   3.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   4.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.8  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 205 CKFFSIQNYVRLT 243
           CKFFSI N + L+
Sbjct: 410 CKFFSIDNALLLS 422



 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 205 CKFFSIQN 228
           CKFFSI N
Sbjct: 357 CKFFSIDN 364


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 14  GLRRG*AQRPSQLVHGSRRIHRARRGCLHR 103
           G R   A   SQLV   R  HR++  C  R
Sbjct: 85  GKRARTAYTSSQLVELEREFHRSKYLCRPR 114


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 14  GLRRG*AQRPSQLVHGSRRIHRARRGCLHR 103
           G R   A   SQLV   R  HR++  C  R
Sbjct: 105 GKRARTAYTSSQLVELEREFHRSKYLCRPR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,485
Number of Sequences: 336
Number of extensions: 380
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)