Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 34 0.060
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 33 0.18
05_01_0092 - 609537-609941,610067-610328,610624-610731,611083-61... 32 0.32
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 31 0.56
07_03_0072 - 13051145-13052362 31 0.74
11_04_0242 - 15273774-15274043,15274131-15274235 29 1.7
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 29 1.7
06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 29 2.3
07_03_0953 + 22860954-22861262 29 3.0
05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448 29 3.0
02_02_0341 + 9141556-9142654,9143357-9143454 29 3.0
11_01_0538 + 4265540-4265896 28 4.0
04_03_0968 + 21328473-21328671,21328861-21328991 28 4.0
01_07_0360 + 43056226-43057566 28 4.0
07_03_0339 + 16941359-16941670,16941703-16942074 28 5.2
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926... 28 5.2
02_04_0413 + 22681957-22682035,22682253-22682788 28 5.2
08_02_0773 + 21043553-21043813,21044775-21045203 27 6.9
03_05_0808 - 27854798-27855112 27 6.9
01_03_0051 - 11985456-11985803 27 6.9
01_05_0583 + 23420160-23420480 27 9.1
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 34.3 bits (75), Expect = 0.060
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +3
Query: 279 RSPCCNSI--C--CSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLH 446
R+PCCN + C C T+ C C + + C + G+ C C C
Sbjct: 28 RAPCCNDVFHCRHCHNESTVICLVCDTEQPVAQVCYNCGV-CMGEYFCSACKFFDDDVR- 85
Query: 447 SPCSCCIRCRLPIW 488
C CC+ C IW
Sbjct: 86 --CRCCLLCFCWIW 97
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 243 ESFDSSTGLRSCRSPCCNSICCSYSCTL---RCTFCYSNRCGTSCCSSSGILCCFAILCW 413
E FD + G S + CC +C +C+ RC CG C L CF
Sbjct: 741 EMFDKAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCGALSC-----LACFECCSL 795
Query: 414 CC 419
CC
Sbjct: 796 CC 797
>05_01_0092 -
609537-609941,610067-610328,610624-610731,611083-611204,
611295-611366,611531-611590,611692-611874
Length = 403
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +3
Query: 303 CCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSN-PASGSLHSPCSCCIRCR 476
C S T C C+ C +C L CC N P +L P C CR
Sbjct: 267 CSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTTLTPPSPACPFCR 325
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 475 RQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 362
RQRMQQ+Q R L LEQ Q A Q ++ L +QQ+
Sbjct: 477 RQRMQQQQALQRRQLF-LEQQQQQAALQQQLMLEQQQQ 513
>07_03_0072 - 13051145-13052362
Length = 405
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 339 KRCSVGCSYRSSKWSCNRGYGRSEGR 262
+ C G R S W C RGY RS+ R
Sbjct: 206 RACLAGTRPRCSAWQCRRGYWRSQRR 231
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 405 LCWCCSNPASGSLHSPCSCCIRCRLP 482
+C CC P + +PC I C +P
Sbjct: 78 VCTCCGGPHGVCIPAPCCYAINCNIP 103
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 423 NPASGSLHSPCS--CCIRCRLPIWSSTSSTFPV 515
NP LH+P S RLP+W ST S PV
Sbjct: 32 NPPHRFLHAPSSPAAASPSRLPLWRSTGSLLPV 64
>06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507
Length = 111
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 477 AGSVCSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKW 298
A + S S + + Q + S++ I C+ S RC W + C+ C+ ++
Sbjct: 20 AAAASSSSHPQLVQQMQVKRARSLLQAPKIDCQGTCSGRCANNWKKEMCNKMCNVCCNRC 79
Query: 297 SC-NRGYGRSEGRCC 256
+C G G+ C
Sbjct: 80 NCVPPGSGQDTRHLC 94
>07_03_0953 + 22860954-22861262
Length = 102
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 375 WSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGR 262
W R W +R S CS SS WS + G GR
Sbjct: 9 WMRMAGRQRWLKRRRSGACSRASSAWSRSGGCDTQNGR 46
>05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448
Length = 92
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 333 CSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQC----PAGDINLCSVWRNVLRYS 184
C C YR SK + R+ G CC QR C +G+ N+C + N+ ++
Sbjct: 34 CGAKCGYRCSKSGRPKMCLRACGTCC-QRCGCVPPGTSGNENVCPCYANMTTHN 86
>02_02_0341 + 9141556-9142654,9143357-9143454
Length = 398
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 483 WVAGSVCSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSV 325
WV G C + + R +D + +++ S C +K T W CS+
Sbjct: 33 WVGGDHCHMFSKLLSIRCEDCPNLTVLLLPSFECSISDTKDINTIWFPNLCSL 85
>11_01_0538 + 4265540-4265896
Length = 118
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 282 SPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSC 461
SP C + C RC +R C +++G CC C P +G +C
Sbjct: 21 SPAFPGNCGADVCQFRCAVMGGDREKAYCDAATGRCCCPPGSATLC-RPLAGCRSRIPAC 79
Query: 462 CIRCR 476
I+C+
Sbjct: 80 RIKCK 84
>04_03_0968 + 21328473-21328671,21328861-21328991
Length = 109
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +3
Query: 309 SYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 455
S+S L C S +CCS L LC C +NP + C
Sbjct: 7 SFSLQLACAKSLSPLLVGACCSGQRQLAAGLRLCGCLTNPGYSLTKNVC 55
>01_07_0360 + 43056226-43057566
Length = 446
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +3
Query: 330 CTFCYSNRCG---TSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCCIRCRLPI 485
C C+ C C C AI C NP + LH P C CR I
Sbjct: 317 CNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPP--ACPFCRTTI 369
>07_03_0339 + 16941359-16941670,16941703-16942074
Length = 227
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 375 WSSKRCRTYWSSKRCSVGCSYRSSKW 298
WS R W +RCS CS S W
Sbjct: 145 WSRMAGRRRWLKRRCSGACSRALSAW 170
>03_02_0534 -
9267297-9267734,9268376-9268649,9268782-9268889,
9269476-9269567,9269652-9269711,9269812-9269994
Length = 384
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/42 (23%), Positives = 15/42 (35%)
Frame = +3
Query: 330 CTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 455
C+ C+ C +C L CC S + +PC
Sbjct: 250 CSICFEQACTIEVRECGHQMCAACTLALCCHAKPSAAAATPC 291
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +3
Query: 282 SPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSS 380
SPC + CC + C C CG C S
Sbjct: 100 SPCVHPPCCESAAGCCCNGCSGGGCGGGQCPPS 132
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 282 YGRSEGRCCYQRTQCPAGDINLCSVWRN 199
Y ++ CCY R+ PA D + +W N
Sbjct: 40 YCDTKQSCCYPRSGKPAADFGIHGLWPN 67
>03_05_0808 - 27854798-27855112
Length = 104
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 384 CRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGRCC-YQRTQCPAGDIN 220
C + K C+ Y + CSV C S+K C +C Y C A IN
Sbjct: 49 CDHACKKSCKGYGRNSDCSVPCGDPSNKAGCKSCLQAYYSKCLNYCGQACRAVCIN 104
>01_03_0051 - 11985456-11985803
Length = 115
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 375 WSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGR 262
W R W +R + CS SS WS + G GR
Sbjct: 9 WMRMAGRRRWLKRRRTGACSRASSAWSRSGGCDAQNGR 46
>01_05_0583 + 23420160-23420480
Length = 106
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 375 WSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGR 262
W+ R W +R S CS S WS + G GR
Sbjct: 9 WTRMAGRRRWLKRRRSGACSRASLAWSRSGGCDAQNGR 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,351
Number of Sequences: 37544
Number of extensions: 222304
Number of successful extensions: 1068
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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