Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B06f
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 456 AESGQTQVPEYSSK*RPAVHLTSVASP 376
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 234 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 145
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 234 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 145
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 336 GWAKNPLRRGHCELGLGGWSSVLSPQSTLKGWSHLLIFLIVGSNTR 199
           GW+   L     E  + G  SV    + +KG+    + L V +N R
Sbjct: 377 GWSARGLVSDGNEAEVEGTLSVQPQANPVKGFEEYFLNLTVENNRR 422


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 113 DGQYEDDRQCDKFF 154
           +GQY DD     FF
Sbjct: 97  EGQYHDDEDLKTFF 110


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 158 CVDGVATTKLCPDGLVFDPTIRKIN 232
           C D   T K CP G     T+  +N
Sbjct: 81  CGDIAHTVKYCPKGTKNPGTLATVN 105


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 292 LGGLEFSPIAAVYVEGLVAFVD 227
           L G +   I  +Y+E L A+VD
Sbjct: 492 LEGWKVEKIQEIYLEALRAYVD 513


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 417 STSTPVPASGPIPPADKDATN 479
           +TSTP   S P  PAD   ++
Sbjct: 232 TTSTPGSGSLPASPADSGVSD 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,922
Number of Sequences: 438
Number of extensions: 3161
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)