Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B05f
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   0.37 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.37 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   8.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 278 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCP 186
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 278 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCP 186
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 263 AGVQSWPGEVHPSCQNFDPAKAYSCPQAS 177
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 184 KQVVNIPSFIVRLD-SGKHIDFSLKSPFGGGRP 89
           ++V  +P  +  LD SG+ +  S  +PF G  P
Sbjct: 893 QEVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSP 925


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 284 LGASSADAGVQSWPGEVHPSCQNF 213
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 224 CQNFDPAKAYSCPQASCE 171
           C+N  P     C +A+CE
Sbjct: 878 CENGKPTCWRECDKATCE 895


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 298 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 185
           +I D  +   Q   F   L  +I  A   + Q H+R+R
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIR 659


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 298 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 185
           +I D  +   Q   F   L  +I  A   + Q H+R+R
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIR 659


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 298 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 185
           +I D  +   Q   F   L  +I  A   + Q H+R+R
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIR 659


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 298 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 185
           +I D  +   Q   F   L  +I  A   + Q H+R+R
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIR 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,235
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)