Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B05f
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 203 9e-54
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 201 3e-53
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 46 3e-06
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.27
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 1.5
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 7.8
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 24 7.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 24 7.8
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 24 7.8
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 203 bits (495), Expect = 9e-54
Identities = 93/117 (79%), Positives = 106/117 (90%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 223 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 53
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 201 bits (491), Expect = 3e-53
Identities = 92/114 (80%), Positives = 105/114 (92%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 223 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 62
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 45.6 bits (103), Expect = 3e-06
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = -3
Query: 400 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 221
DP RL N LL +L +G+L K D + RRL + K +++ + A
Sbjct: 68 DPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEA 127
Query: 220 RILIRQRHIRVRKQVVNIPSFIV 152
LI Q H+RV V+ P+++V
Sbjct: 128 TRLIEQGHVRVGPHVITDPAYLV 150
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.27
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -2
Query: 296 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 165
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 325 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 194
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 170 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 69
HP + GL Q H + ++ W SSW ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 7.8
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -2
Query: 146 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGW 48
G + A +L ++S W+ +W +E++ W
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKW 415
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -3
Query: 277 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 122
R L G+ ++I+ +++L + +RK N+P ++ LD+ + + F
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTF 161
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 349 IGVLDEKQMKLDYVLGLKIEDFLERR 272
+G++ EK M+LD V G K+E ++RR
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRR 125
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 238 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 146
+S+ H R L +H+R+ N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,773
Number of Sequences: 5004
Number of extensions: 32868
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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