Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B05f
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 220 4e-58
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 3.3
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 3.3
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 27 4.4
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 4.4
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 27 5.8
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063) 27 5.8
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77) 27 7.7
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84) 27 7.7
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 220 bits (537), Expect = 4e-58
Identities = 102/117 (87%), Positives = 112/117 (95%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
KDP+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 63 KDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHH 122
Query: 223 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 53
AR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQ
Sbjct: 123 ARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQ 179
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
KDP R+ +L +L +G++ K+ L + F RRL + +A+ +
Sbjct: 67 KDPYRVEATEQILEKLHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKD 125
Query: 223 ARILIRQRHIRVRKQVVNIPSFIV 152
A I Q H+RV +V+ P+F+V
Sbjct: 126 AVKYIEQGHVRVGPEVIMDPAFLV 149
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 316 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 140
D + G++ D+ L K +A L QR + V K VV F+++ +
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187
Query: 139 GKHIDFSLKSPFGGGRPGRVKRKN 68
H+ P+GGG+ G+ K+ +
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNS 210
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 169 CSQLACGHEYAFAGSKFWHDGWTSP 243
C++LA Y++ G +FW + W+ P
Sbjct: 72 CARLAEQKNYSYFGVQFWGECWSGP 96
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -3
Query: 358 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 212
L++I D+K M+ +Y+LGL +E +R +++ + K H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854
>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
Length = 600
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 167 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 295
D+ + A MP P +G+ D + Q +FE +++ T VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 385 FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 206
F G A+ + G+L + LD ++G K ED+ +RRL+ ++ K A++ ++
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196
Query: 205 QRH 197
++H
Sbjct: 1197 KKH 1199
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -2
Query: 224 CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 57
C NFD + C S H IYC G L +++ W C+ + P G
Sbjct: 953 CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007
>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
Length = 499
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 286 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPS 405
SP+ +D H VSSV LQ DD H L+ ++ PS
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPS 257
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 326 DETRLCAWSED*GLLGASSADAGVQSW 246
D + CAWS + + +SSAD V W
Sbjct: 89 DRVKSCAWSPNGEYVASSSADGRVTLW 115
>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
Length = 738
Score = 26.6 bits (56), Expect = 7.7
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRI-GVLDEKQMKLDYVLGLKIEDFLERRLQTQVF----KAGLA 239
+D +R +RRL +I L +++++ +L +I L +R++ + K G A
Sbjct: 260 RDRQRRLRQRRRMRRLRKIIDNLRKREIRRKVILRRRINR-LNKRMRIYINRMRRKHGKA 318
Query: 238 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 59
+ ++ R+ I +R I + ++ RLD + LK+ R R++RK L +
Sbjct: 319 RRQYNIRVRILRRQITILRKNKTAKRLRQRLDKVMNHVRRLKNRLARQRRERLRRKRLNR 378
>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 115 SERSQCACQSPGAQ*MMGCSQLACGHE 195
S +SQ C S ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252
>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
Length = 563
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 173 HNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTL 280
HN L D N L QNS + + ++ + + LQT+L
Sbjct: 22 HNSLEDENSKLSGQNSELTERVQNLTNDAASLQTSL 57
>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 286 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 170
F++ L +VFK + HA I IRQ I +R ++N
Sbjct: 191 FMQNSL-VEVFKVNPHLTYQHAFIYIRQMAIHLRNAIIN 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,001,468
Number of Sequences: 59808
Number of extensions: 266916
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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