Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B05f
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 186 5e-48
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 185 9e-48
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 42 2e-04
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 30 0.51
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 2.1
At1g43730.1 68414.m05028 hypothetical protein 28 2.1
At5g41310.1 68418.m05020 kinesin motor protein-related 27 3.6
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 3.6
At5g28615.1 68418.m03493 hypothetical protein 27 3.6
At1g60720.1 68414.m06835 hypothetical protein 27 4.8
At1g56020.1 68414.m06431 expressed protein 27 4.8
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 27 6.3
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 27 6.3
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 186 bits (453), Expect = 5e-48
Identities = 86/116 (74%), Positives = 103/116 (88%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
K+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 223 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 56
AR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 185 bits (451), Expect = 9e-48
Identities = 86/112 (76%), Positives = 100/112 (89%)
Frame = -3
Query: 403 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 224
K P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 223 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 68
+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = -3
Query: 400 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 221
DP R+ + LL +L +GV+ ++ L L + F RRL T + A+ A
Sbjct: 67 DPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEA 125
Query: 220 RILIRQRHIRVRKQVVNIPSFIV 152
I Q H+RV + + P+F+V
Sbjct: 126 VTYIEQGHVRVGPETITDPAFLV 148
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 30.3 bits (65), Expect = 0.51
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 95 TSTEWRFQREVNVLARVQAHN 157
+S E RF REVN+++RVQ HN
Sbjct: 57 SSLESRFVREVNMMSRVQHHN 77
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 329 TDETRLCAWSED*GLLGASSADAGVQSW 246
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 211 SKFWHDGWTSPGQL 252
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 267 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 160
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 361 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 260
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 211 SKFWHDGWTSPGQL 252
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 217 FWHDGWTSPGQL 252
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 181 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 354
AC + KF GWTSP + DD RS Q + + + PV+ +E
Sbjct: 4 ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 260 GVQSWPGEVHPSCQNFDPAKAY 195
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 260 GVQSWPGEVHPSCQNFDPAKAY 195
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,911
Number of Sequences: 28952
Number of extensions: 186274
Number of successful extensions: 548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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