Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 192 1e-49
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 191 2e-49
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 190 6e-49
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 182 1e-46
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 158 2e-39
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 119 1e-27
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 119 1e-27
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 117 4e-27
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 117 4e-27
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 113 9e-26
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 91 5e-19
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 91 5e-19
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 87 7e-18
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 85 2e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 83 1e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 82 3e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 81 4e-16
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 79 2e-15
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 79 2e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 79 2e-15
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 78 4e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 77 5e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 77 5e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 77 5e-15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 77 7e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 77 1e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 76 1e-14
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 75 4e-14
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 75 4e-14
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 74 5e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 72 3e-13
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 72 3e-13
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 71 4e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 70 1e-12
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 69 1e-12
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 69 1e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 69 1e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 69 3e-12
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 68 3e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 66 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 65 3e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 1e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 63 1e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 62 2e-10
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 62 3e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 61 5e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 60 7e-10
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 60 9e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 59 2e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 2e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 59 2e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 58 3e-09
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 58 4e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 55 3e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 54 8e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 2e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 2e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 51 5e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 50 9e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 4e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 45 3e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 41 6e-04
At3g10020.1 68416.m01202 expressed protein 33 0.15
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 0.82
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 0.82
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 1.9
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 2.5
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 4.4
At1g76010.1 68414.m08825 expressed protein 28 4.4
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 5.8
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 5.8
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 7.7
At5g03220.1 68418.m00270 transcriptional co-activator-related co... 27 7.7
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 27 7.7
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 192 bits (468), Expect = 1e-49
Identities = 92/131 (70%), Positives = 109/131 (83%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 302
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 303 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 482
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 483 RQLESGVHVVV 515
R L++GVHVVV
Sbjct: 152 RILQAGVHVVV 162
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 191 bits (466), Expect = 2e-49
Identities = 91/134 (67%), Positives = 111/134 (82%)
Frame = +3
Query: 114 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 293
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 294 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 473
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 474 EDIRQLESGVHVVV 515
ED R L+SGVHVVV
Sbjct: 151 EDQRVLQSGVHVVV 164
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 190 bits (462), Expect = 6e-49
Identities = 90/131 (68%), Positives = 109/131 (83%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 302
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 303 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 482
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 483 RQLESGVHVVV 515
R L++GVHVVV
Sbjct: 152 RILQAGVHVVV 162
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 182 bits (443), Expect = 1e-46
Identities = 84/130 (64%), Positives = 106/130 (81%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 302
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 303 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 482
++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 483 RQLESGVHVV 512
R+LE GVHVV
Sbjct: 148 RKLEHGVHVV 157
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 158 bits (384), Expect = 2e-39
Identities = 68/124 (54%), Positives = 99/124 (79%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 321 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 500
Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 501 VHVV 512
VH V
Sbjct: 141 VHAV 144
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 119 bits (286), Expect = 1e-27
Identities = 58/122 (47%), Positives = 82/122 (67%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 510 VV 515
+V
Sbjct: 253 LV 254
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 119 bits (286), Expect = 1e-27
Identities = 58/122 (47%), Positives = 82/122 (67%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 510 VV 515
+V
Sbjct: 253 LV 254
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 117 bits (282), Expect = 4e-27
Identities = 57/122 (46%), Positives = 82/122 (67%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 510 VV 515
+V
Sbjct: 246 LV 247
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 117 bits (282), Expect = 4e-27
Identities = 57/122 (46%), Positives = 82/122 (67%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 510 VV 515
+V
Sbjct: 246 LV 247
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 113 bits (271), Expect = 9e-26
Identities = 57/122 (46%), Positives = 79/122 (64%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 510 VV 515
+V
Sbjct: 276 LV 277
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 90.6 bits (215), Expect = 5e-19
Identities = 56/125 (44%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 500
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 501 VHVVV 515
H+VV
Sbjct: 167 PHIVV 171
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 90.6 bits (215), Expect = 5e-19
Identities = 56/125 (44%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 500
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 501 VHVVV 515
H+VV
Sbjct: 167 PHIVV 171
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 87.0 bits (206), Expect = 7e-18
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 323
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 324 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 495 SGVHVVVA 518
S +VVA
Sbjct: 287 SMPDIVVA 294
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 85.4 bits (202), Expect = 2e-17
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Frame = +3
Query: 132 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 311
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 312 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 455
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 456 GGTNVREDIRQLESGVHVVVA 518
GG + + L HV+VA
Sbjct: 125 GGIDRMQQTIALGKRPHVIVA 145
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 82.6 bits (195), Expect = 1e-16
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 330 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 509
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 510 VV 515
V+
Sbjct: 180 VI 181
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.8 bits (193), Expect = 3e-16
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 8/134 (5%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 321 LQQI--------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 476
L I + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 477 DIRQLESGVHVVVA 518
++ G +V+A
Sbjct: 432 QGLKITQGCEIVIA 445
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 81.0 bits (191), Expect = 4e-16
Identities = 40/125 (32%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 330 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 503
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 504 HVVVA 518
V++A
Sbjct: 150 DVIIA 154
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 79.0 bits (186), Expect = 2e-15
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Frame = +3
Query: 156 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 332
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 333 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 497
+ Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 498 GVHVVV 515
G+ V V
Sbjct: 238 GIDVAV 243
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 79.0 bits (186), Expect = 2e-15
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Frame = +3
Query: 117 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 287
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 288 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 437
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 438 KCHACIGGTNVREDIRQLESGVHVVVA 518
K GGT + + +R+LE GV ++VA
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVA 293
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 78.6 bits (185), Expect = 2e-15
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Frame = +3
Query: 156 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 332
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 333 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 497
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 498 GVHVVV 515
GV V V
Sbjct: 226 GVDVAV 231
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 77.8 bits (183), Expect = 4e-15
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 317
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 318 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 422
+L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.4 bits (182), Expect = 5e-15
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 317
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 318 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 495 SGVHVVVA 518
G +VVA
Sbjct: 279 RGADIVVA 286
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.4 bits (182), Expect = 5e-15
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 317
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 318 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 495 SGVHVVVA 518
G +VVA
Sbjct: 279 RGADIVVA 286
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 77.4 bits (182), Expect = 5e-15
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 317
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 318 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 495 SGVHVVVA 518
G +VVA
Sbjct: 279 RGADIVVA 286
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 77.0 bits (181), Expect = 7e-15
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Frame = +3
Query: 117 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 287
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 288 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 437
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 438 KCHACIGGTNVREDIRQLESGVHVVVA 518
K GGT V + IR+LE GV ++VA
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVA 280
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 76.6 bits (180), Expect = 1e-14
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 317
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 318 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
+L+ R LILAPTRELA QIQ + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 495 SGVHVVVA 518
G +VVA
Sbjct: 556 RGADIVVA 563
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 76.2 bits (179), Expect = 1e-14
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 306 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 471 REDIRQLESGVHVVVA 518
E ++L++G +VVA
Sbjct: 342 HEQFKELKAGCEIVVA 357
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 74.5 bits (175), Expect = 4e-14
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 306 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 471 REDIRQLESGVHVVVA 518
IR L GV +V+A
Sbjct: 279 GPQIRDLRRGVEIVIA 294
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 74.5 bits (175), Expect = 4e-14
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 306 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 471 REDIRQLESGVHVVVA 518
IR L GV +V+A
Sbjct: 279 GPQIRDLRRGVEIVIA 294
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 74.1 bits (174), Expect = 5e-14
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 317
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 318 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 494
+L + S R +++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 495 SGVHVVVA 518
SG ++V+A
Sbjct: 210 SGSNLVIA 217
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 71.7 bits (168), Expect = 3e-13
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Frame = +3
Query: 183 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 353
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 354 QA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVA 518
L+L+PTRELA QIQ + G C GG ++++E GV +VVA
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVA 357
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 71.7 bits (168), Expect = 3e-13
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 306 FSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
+ + + ++ L+LAPTRELA QIQ+ G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 471 REDIRQLESGVHVVVA 518
+R L+ GV +V+A
Sbjct: 213 GPQVRDLQKGVEIVIA 228
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 321 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 476
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 477 DIRQLESGVHVVV 515
+ +++ GV +++
Sbjct: 229 QLYRIQQGVELII 241
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 69.7 bits (163), Expect = 1e-12
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 306 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 471 REDIRQLESGVHVVV 515
+ I +L+ G +VV
Sbjct: 643 AQQISELKRGTEIVV 657
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 69.3 bits (162), Expect = 1e-12
Identities = 36/102 (35%), Positives = 65/102 (63%), Gaps = 6/102 (5%)
Frame = +3
Query: 132 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 311
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 312 ISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIAL 419
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 69.3 bits (162), Expect = 1e-12
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 321 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 471 REDIRQLESGVHVVVA 518
+ +R+LE G ++VA
Sbjct: 270 HQQLRELERGCDILVA 285
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 69.3 bits (162), Expect = 1e-12
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 321 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 471 REDIRQLESGVHVVVA 518
+ +R+LE G ++VA
Sbjct: 270 HQQLRELERGCDILVA 285
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 68.5 bits (160), Expect = 3e-12
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Frame = +3
Query: 159 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 335
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 336 -----TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 488
T+ R + L+LAPTRELA+Q++K + +L+ C GG +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSA 224
Query: 489 LESGVHVVV 515
L GV VVV
Sbjct: 225 LTRGVDVVV 233
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 68.1 bits (159), Expect = 3e-12
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 305
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 306 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 470
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 471 REDIRQLESGVHVVV 515
+ I +L+ G +VV
Sbjct: 510 AQQISELKRGTEIVV 524
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 66.5 bits (155), Expect = 1e-11
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 314
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 315 SILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 491
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 492 ESGVHVVVA 518
GV+++VA
Sbjct: 274 AKGVNLLVA 282
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 64.9 bits (151), Expect = 3e-11
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 10/177 (5%)
Frame = +3
Query: 15 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 191
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 192 YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC------ 353
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189
Query: 354 ---QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVV 515
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVI 246
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 320
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 321 L-----QQIDTSIRECQ---ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIG 458
+ ++I I + AL++ P+RELA+Q +++ V +L + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 459 GTNVREDIRQLESGVHVVVA 518
G ++R + ++ GVH+VVA
Sbjct: 216 GVDMRSQLDVVKKGVHIVVA 235
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Frame = +3
Query: 135 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 314
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 315 SILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 467
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 468 VREDIRQLESGVHVVV 515
+R L + + +VV
Sbjct: 229 IRPQEDSLNNAIDMVV 244
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +3
Query: 171 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 350
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 351 CQALILAPTRELAQQIQKV 407
QA+I+ PTREL Q+ KV
Sbjct: 145 VQAVIVVPTRELGMQVTKV 163
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 61.7 bits (143), Expect = 3e-10
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 323
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 324 QQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVR 473
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 474 EDIRQLESGVHVVVA 518
+ LE GV V++A
Sbjct: 494 TQLENLEQGVDVLIA 508
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.9 bits (141), Expect = 5e-10
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 261 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 437
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 438 KCHACIGGTNVR--EDIRQLESGVHVVV 515
K GG N++ +D+ + E H+VV
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVV 88
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 60.5 bits (140), Expect = 7e-10
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 330 I--------DTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDI 482
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 483 RQLE-SGVHVVVA 518
R+L+ S ++VA
Sbjct: 202 RRLQKSPCQILVA 214
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 60.1 bits (139), Expect = 9e-10
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 317
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 318 ILQQIDT-----SIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVRED 479
+L+ +++ + LIL PTRELA QI A L +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 480 IRQLES 497
++LES
Sbjct: 497 QQRLES 502
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 59.3 bits (137), Expect = 2e-09
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 308
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 309 -SISILQQIDTSIRECQ---ALILAPTRELAQQIQKVV------IALGDHLNAKCHACIG 458
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 459 GTNVREDIRQLESGVHVVVA 518
G ++R + ++ GVH+VVA
Sbjct: 265 GIDMRSQLEVVKRGVHIVVA 284
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 58.8 bits (136), Expect = 2e-09
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Frame = +3
Query: 15 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 194
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 195 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRE 350
GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D+
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 458
Query: 351 CQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 497
L++ PTRELA Q + L H + IGGT + + R++++
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 58.8 bits (136), Expect = 2e-09
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 317
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 318 ILQQIDT-----SIRECQALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVR 473
+L+ +++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 474 EDIRQLES 497
D ++LES
Sbjct: 448 LDQQRLES 455
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 58.4 bits (135), Expect = 3e-09
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 323
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 324 QQI-------------DTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGG 461
+I + E QA+I+AP+REL QI ++V LG +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 462 TN 467
N
Sbjct: 230 AN 231
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 58.0 bits (134), Expect = 4e-09
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Frame = +3
Query: 81 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQG 257
S DG ++ + + + M L L++ IY F++P+ IQ+ + QG
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 258 RDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ---------ALILAPT 377
+DVI A++G+GKT F + ILQ+ +D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 378 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVA 518
RELA Q+ + + +L+ K +GG + R+L+ +VVA
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVA 335
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Frame = +3
Query: 231 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 386
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 387 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVV 515
Q++ LG L K +GG + + +++ GV +++
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELII 104
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 53.6 bits (123), Expect = 8e-08
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 329
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 330 I--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDI 482
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 483 RQLES 497
+++++
Sbjct: 176 KRMQT 180
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.2 bits (122), Expect = 1e-07
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Frame = +3
Query: 165 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS- 341
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 342 -----IRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ESG 500
+ +I++PTREL+ QI KV L N +GG V D+ L E G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 501 VHVVV 515
++++
Sbjct: 143 ANLLI 147
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +3
Query: 201 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 362
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 363 ILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVA 518
++ PTREL Q+ + + L + + GG ++ +L G+ +++A
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIA 161
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 177 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 353
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 354 QALILAPTRELAQQ 395
+A+IL+P RELA Q
Sbjct: 212 RAVILSPARELAAQ 225
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 50.8 bits (116), Expect = 5e-07
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Frame = +3
Query: 42 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 221
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 222 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 389
+Q AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 390 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 506
Q V+ +G IGG RE + + VH
Sbjct: 157 AQTFGVLNKVGKFHKFSAGLLIGG---REGVDVEKERVH 192
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 50.0 bits (114), Expect = 9e-07
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Frame = +3
Query: 102 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 275
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 276 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIALGDHLNA 437
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 438 KCHACIGGTNVRED 479
KC N E+
Sbjct: 120 KCREVEADMNTLEE 133
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +3
Query: 219 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 395
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 396 IQKVVIALGDHLNAKCHACIGGTNVREDIRQL 491
++ V A+ + + +G +++ +I QL
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQL 141
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.0 bits (109), Expect = 4e-06
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 10/175 (5%)
Frame = +3
Query: 21 ERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 200
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 201 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 350
G E IQ + G D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 351 CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVV 515
L+L PTRELA+Q+ A G L GG + +L+ GV +VV
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVV 229
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 45.2 bits (102), Expect = 3e-05
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Frame = +3
Query: 150 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 323
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 324 QQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 482
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 483 RQL-ESGVHVVV 515
+ + E G +V++
Sbjct: 136 KIIEEEGCNVLI 147
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.7 bits (91), Expect = 6e-04
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Frame = +3
Query: 120 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 299
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 300 ATFSISILQQIDTSIRECQ--------------ALILAPTRELAQQIQKVVIALGD 425
+ I+ Q+ + + + +LIL P L +Q+ ++V L D
Sbjct: 132 HGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVD 187
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 60 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 233
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 234 AIMPCIQGR 260
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +3
Query: 309 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 461
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 0.82
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 198 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 377
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 378 RELAQQIQKVVIALG 422
L Q + ALG
Sbjct: 139 LSLIQDQVMGLAALG 153
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 360 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 464
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 266 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 165
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 327 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 461
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 15 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 113
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 162 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 162 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 494 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 390
L+LA++ D + A I I K+ HHLLN L
Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At5g03220.1 68418.m00270 transcriptional co-activator-related
contains weak similarity to Cofactor required for Sp1
transcriptional activation subunit 9 (Transcriptional
co-activator CRSP33) (RNA polymerase transcriptional
regulation mediator subunit 7 homolog) (hMED7)
(Activator-recruited cofactor 34 kDa component) (ARC34)
(Swiss-Prot:O43513) [Homo sapiens]
Length = 168
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 494 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 390
L+LA++ D + A I I K+ HHLLN L
Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 405 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVV 512
V+++L DH ++K H + +R D QL H+V
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLV 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,833
Number of Sequences: 28952
Number of extensions: 285555
Number of successful extensions: 1078
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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