Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    55   6e-09
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   0.97 
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   5.2  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 25/76 (32%), Positives = 41/76 (53%)
 Frame = +3

Query: 18  EDESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQA 197
           +D   +   G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +A
Sbjct: 52  QDPPSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEA 111

Query: 198 ASVVEKLGEYLITCGY 245
           A + E L +YL+  GY
Sbjct: 112 AKITEALADYLVGVGY 127


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +1

Query: 403 SLVCTCDYFVD--SGPFLYAHR---LLKXXXXXXXXKFVLKFCF 519
           +++C C+YF+D  +GPFL +++   +L         + VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 255 KLAVI*EYYKIIFFPRGNK*LHFVYSIK 338
           K+++I E  K+ F P GNK  HF +S+K
Sbjct: 295 KVSLIQEGVKVDF-PEGNKFQHFFHSLK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,126
Number of Sequences: 5004
Number of extensions: 45617
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)