Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           59   2e-09
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           59   2e-09
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           56   2e-08
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386...    31   0.56 
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649...    28   5.2  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   6.9  
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    27   9.1  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 18  EDESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 194
           ++   L   G+ +  T+Y+ + G    +IR K G  G+   KT QA+V+ +Y+EP+ P Q
Sbjct: 55  DEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQ 114

Query: 195 AASVVEKLGEYLITCG 242
              VVE+LG+YL+  G
Sbjct: 115 CNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 18  EDESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 194
           ++   L   G+ +  T+Y+ + G    +IR K G  G+   KT QA+V+ +Y+EP+ P Q
Sbjct: 55  DEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQ 114

Query: 195 AASVVEKLGEYLITCG 242
              VVE+LG+YL+  G
Sbjct: 115 CNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 18  EDESLLTSGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 194
           ++   L   G+ + GT+Y+ + G   + IR K G  G+   KT  ++++ +Y+EP+ P Q
Sbjct: 55  DEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQ 114

Query: 195 AASVVEKLGEYLITCG 242
              +VE+LG+YLI  G
Sbjct: 115 CNMIVERLGDYLIEQG 130


>05_03_0218 -
           10437377-10437622,10437896-10438141,10438528-10438611,
           10438720-10438854
          Length = 236

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 26  ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 193
           + A  W  + +  ++    +W R Y P    W+  GRRA   D       S+  T PT  
Sbjct: 14  LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73

Query: 194 GRICRGEVRRIFNYLWLLE 250
           GR+   E  +I ++++LLE
Sbjct: 74  GRVSGKE--QIKHFVYLLE 90


>01_05_0024 -
           17262504-17263308,17264251-17264399,17264879-17264978,
           17265829-17265953,17267565-17267743,17269648-17270698
          Length = 802

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 38  EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 148
           E RRD +       +WH+ Y  R+A QG  A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 87  CH*GRCTACPLSSRR 43
           CH G+C  CPL  RR
Sbjct: 324 CHAGKCGGCPLQGRR 338


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 350 VLLSLYRIYKMQLLISPWKKYYLIVLLDHG 261
           VL  L+ +Y   L +SPW   + ++  D+G
Sbjct: 229 VLCPLFLLYMFGLFVSPWISLWRLIQQDYG 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,092
Number of Sequences: 37544
Number of extensions: 297332
Number of successful extensions: 578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)