Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p... 62 2e-10
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S... 58 3e-09
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p... 58 3e-09
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic... 56 1e-08
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller... 56 1e-08
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 33 0.15
At4g22260.1 68417.m03220 alternative oxidase, putative / immutan... 32 0.20
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo... 29 2.5
>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
thaliana]
Length = 134
Score = 62.1 bits (144), Expect = 2e-10
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 33 LTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVV 209
L G+ +AG +Y+ + G + +IR K G G+ KT Q++V LYEEP+ P Q VV
Sbjct: 63 LAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVV 122
Query: 210 EKLGEYLITCG 242
E+LG+YLI G
Sbjct: 123 ERLGDYLIEQG 133
>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
Length = 168
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 33 LTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVV 209
L G+ + G +Y+ + G + +IR K G GV KT A+V +Y+EP+ P Q VV
Sbjct: 97 LAPTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVV 156
Query: 210 EKLGEYLITCG 242
E LGEYLI G
Sbjct: 157 ENLGEYLIESG 167
>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
thaliana]
Length = 134
Score = 58.4 bits (135), Expect = 3e-09
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 33 LTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVV 209
L G+ +AG +Y+ + G +IR K G G+ KT Q+ V +YEEP+ P Q VV
Sbjct: 63 LAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVV 122
Query: 210 EKLGEYLITCG 242
E+LG+YL+ G
Sbjct: 123 ERLGDYLLEQG 133
>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
thaliana]; identical to cDNA profilin (PRF2) GI:9965570
Length = 131
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 18 EDESLLTSGGVTIAGTRYIYLSG-TDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 194
E+ L G+ + G +Y+ + G +IR K G GV KT QA+V +Y+EP+ Q
Sbjct: 55 EEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQ 114
Query: 195 AASVVEKLGEYLITCG 242
VVE+LG+YLI G
Sbjct: 115 CNLVVERLGDYLIESG 130
>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
Ara t 8 identical to profilin 1 (Allergen Ara t 8)
SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
Length = 131
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 18 EDESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 194
E+ L G+ + G +Y+ + G +IR K G GV KT QA+V Y+EP+ Q
Sbjct: 55 EEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQ 114
Query: 195 AASVVEKLGEYLI 233
VVE+LG+YLI
Sbjct: 115 CNLVVERLGDYLI 127
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 26 ITANEWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTASCGHFSL*RTHPTSAGRIC 205
I +E RR +H+P W R + + W G ++ T++ ++ + T+ T+A + C
Sbjct: 199 IMCHEMRRSMKHVGIHVPPWRRNGYMQAKWFG---FYKRTSTTNNYEMVNTYDTTAFKGC 255
Query: 206 RGE 214
+ E
Sbjct: 256 KEE 258
>At4g22260.1 68417.m03220 alternative oxidase, putative / immutans
protein (IM) identical to IMMUTANS from Arabidopsis
thaliana [gi:4138855]; contains Pfam profile PF01786
alternative oxidase
Length = 351
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 348 PLITL*NIQNAVTYFPVEKILSYSTLRSRRASTSNNHR 235
PL+TL + AV+Y ++L + L SRR NNHR
Sbjct: 17 PLVTLRRSRAAVSYSSSHRLLHHLPLSSRRLLLRNNHR 54
>At1g12530.1 68414.m01451 hypothetical protein ; expression
supported by MPSS
Length = 192
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 454 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 329
R+K ++ +NN + + S L+RH N+KT + S F E
Sbjct: 32 RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,592
Number of Sequences: 28952
Number of extensions: 235010
Number of successful extensions: 489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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