Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    38   0.001
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    30   0.18 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.56 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   2.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   3.0  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    26   3.0  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   5.2  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   6.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   6.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.0  

>SPAC20G8.08c |fft1||fun thirty related protein
            Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +2

Query: 167  HLHQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFS---EVSDYIK-KLGSQNWDYIR 334
            HLH F L       S ++K+LC L+  S P E ++ FS   +V D ++  L + + +++R
Sbjct: 750  HLHPFALKGKPWMDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLR 809

Query: 335  KEPERLTEEMKHLTEQTQELAFTNYKTFV 421
             +     E  + L +        NYK F+
Sbjct: 810  LDGSTPVETRQQLIDDFH--TNENYKVFL 836


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +2

Query: 317 NWD-YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFL 493
           N+D Y+R + E  T +MK   +Q +E+A  + K F+ +A     +++   +SKQ + + +
Sbjct: 302 NFDIYMRTKEENETNQMKAYLKQQEEIA--HIKKFIASAGTYANLVRQA-KSKQKIIDKM 358

Query: 494 DATPGFIEE 520
           +A  G +E+
Sbjct: 359 EAA-GLVEK 366


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 287 SDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNR 466
           +++ ++L  Q  D   KE E LTE  K L EQTQ+      +  VE  E+ R  +K    
Sbjct: 498 NEFDRQLKEQEEDLQNKE-EELTELRKLLREQTQD--SQKLRLLVEQLELERQDLKQAGE 554

Query: 467 SKQS 478
           +  S
Sbjct: 555 NHYS 558


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 29/130 (22%), Positives = 53/130 (40%)
 Frame = +2

Query: 83  LVFEINYFVRNCVKCKL*SVVPILNRRAHLHQFQLSSSSTEMSQELKELCQLIFPSSPTE 262
           L+F+ +Y  ++  K  L + +PI+N    LH     +S+  +  E ++ C L F     +
Sbjct: 9   LIFD-SYDFKHEGKVHLSNFLPIINDLQLLHP----ASAPPLLSEFQKQCTLEFVRQNAD 63

Query: 263 NVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISR 442
             I      D  KKL     D    + E+ + E ++     +E A  +      +   S 
Sbjct: 64  LSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQNSKNSIKEDANEHSVNSAHSKSSSN 123

Query: 443 TIIKDLNRSK 472
              + LN S+
Sbjct: 124 ASPESLNPSQ 133


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 405 FVNANSWVCSVKCFISSVSLSGSFRI 328
           FV  NS  C+V+   +S + +GSFRI
Sbjct: 826 FVAPNSGFCAVQSVANSFAKAGSFRI 851


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 156 TGERTYISFSYLHHQLKCL 212
           TG+RTYI +S +H+ L  L
Sbjct: 235 TGQRTYIVYSGIHYDLAAL 253


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +2

Query: 326 YIRKEPERLTEEMKHLTEQTQELAFTNYKTF--VETAEISRTIIKDLNRSKQSLQNFLDA 499
           Y+ + P    EE KH      + A T Y  F  +E       ++K  +      ++FL+ 
Sbjct: 678 YVERTPGSYIEEKKHSISWCYQNANTTYSKFQSLECQTNLEDMLKHYDVEISPAKSFLEV 737

Query: 500 TPGFIEE 520
            P ++ +
Sbjct: 738 HPNYLNK 744


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 314 QNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLN--RSKQSL 481
           + W+Y+  +  R  E+   + +  + +AF  YK F    E S  ++K  N  RS Q L
Sbjct: 116 EEWNYMLCKNNRHREDFSRIHDIRELMAFRGYK-FPAVDEDSIAVMKPNNSLRSAQEL 172


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 170 LHQFQLSSSSTEMSQELKELCQLI 241
           +H+F LS + T+ ++ L  LCQ I
Sbjct: 403 IHEFSLSETLTQATKRLTLLCQPI 426


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 261 KMSYFLAKSVITSKNWVLRIGTIF 332
           K+    AK+ +TSKNW+   G +F
Sbjct: 775 KILAMTAKTKLTSKNWIPLSGLLF 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,254
Number of Sequences: 5004
Number of extensions: 36122
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)