Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782... 37 0.009
01_03_0282 - 14580875-14580891,14582126-14585855 32 0.24
07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599 32 0.32
10_05_0044 - 8509121-8509191,8509270-8509350,8509452-8509565,850... 29 1.7
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 2.3
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 5.2
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 27 9.1
01_01_0060 + 477667-477816,479312-479722 27 9.1
>12_02_0645 +
21475126-21475293,21475386-21475538,21478101-21478249,
21478449-21478526,21478604-21478697,21478920-21478994,
21479341-21479637,21479722-21479789,21479876-21479930,
21480137-21480275,21480439-21480623,21480748-21481119
Length = 610
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 293 YIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSK 472
Y+ +L S + + + KEPE L + + + Q QE+A NY F+ +E + L
Sbjct: 42 YVSELLSFSIERLHKEPELLRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFD 101
Query: 473 QSLQNFLDATP 505
+ L+ ++ P
Sbjct: 102 RHLEALIEEIP 112
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = +2
Query: 191 SSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKH 370
+S +++ + C + FP++P++ + + Y++KL ++ D + P+R + ++
Sbjct: 942 NSEASVTEMKLDGCNMFFPTTPSKPTVGLWKWCKYLQKLEIKSCDVLIHWPQREFQSLES 1001
Query: 371 LTEQTQE 391
L E T E
Sbjct: 1002 LNELTVE 1008
>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
Length = 243
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 332 RKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDA 499
R+E R+T+E+ LTEQ ++ A + E AE +T+ + NR S +DA
Sbjct: 47 RRETARVTDEIPRLTEQ-EKAASAQLEDDAEAAEKEKTLTETENRRAMSDAENIDA 101
>10_05_0044 -
8509121-8509191,8509270-8509350,8509452-8509565,
8509652-8509702,8510031-8510115
Length = 133
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/102 (24%), Positives = 46/102 (45%)
Frame = +2
Query: 173 HQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERL 352
H+ L T+ ++KE +I + EN ++ +D I +L Q+ KEPE+
Sbjct: 9 HKVSLEIEGTKEKHKMKENAGIISNAESNENSNSMTQGTD-IHQL--QDIRGSLKEPEKD 65
Query: 353 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQS 478
E KH+ E++ + + T + + + +LN K S
Sbjct: 66 KTETKHIQERSSTITQNSGITATQIPQSPALLHDELNMLKLS 107
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.1 bits (62), Expect = 2.3
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Frame = +2
Query: 176 QFQLSSSSTE---MSQELK--ELCQLIFPSSPTENVIFFSEVSDYIKKLGSQ--NWDYIR 334
Q QLS S+ E M E+K E+ Q S + V +S ++ + G ++D++
Sbjct: 894 QQQLSDSNVERKKMENEVKRMEIEQKDCSSKVDKLVEKYSWIATEKQLFGKSGTDYDFVS 953
Query: 335 KEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFI 514
EP + EE+++L Q L K + E + DL K ++N I
Sbjct: 954 CEPHKAREELENLQAQQSSLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKTVI 1013
Query: 515 EE 520
EE
Sbjct: 1014 EE 1015
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 343 WFFPNIV-PILRTQFFDVITDFAKKYDIF 260
W F +IV P++RT F+ V +K+YD+F
Sbjct: 147 WLFSDIVIPVVRTYFY-VTERESKRYDVF 174
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 164 AHLHQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEP 343
A + F+ S + E +++ C+ F P +FS+ DY+K N+ R+
Sbjct: 389 ASMLTFESLSETAEFARKWVPFCKK-FSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAM 447
Query: 344 ERLTEEMK 367
+R EE K
Sbjct: 448 KREYEEFK 455
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 128 KL*SVVPILNRRAHLHQFQLSSSSTEMSQELKELCQL 238
KL S++P R H H + SSSS+ S + + QL
Sbjct: 20 KLSSLIPAAAPRRHHHHYSTSSSSSPPSSTKEAVTQL 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,383
Number of Sequences: 37544
Number of extensions: 181599
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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