Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309B01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11365| Best HMM Match : Dor1 (HMM E-Value=0) 66 1e-11
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20) 35 0.035
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05) 29 3.1
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 29 3.1
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 28 4.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_57751| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 27 9.4
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_11365| Best HMM Match : Dor1 (HMM E-Value=0)
Length = 587
Score = 66.5 bits (155), Expect = 1e-11
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +2
Query: 260 ENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEIS 439
++ + F + +K L +++ +EPERL EE + + EQTQ LAF NYKTF+ TAE S
Sbjct: 3 DDTVSFESDENLLKTLFRESFP--GREPERLAEEKEQVLEQTQNLAFHNYKTFIRTAECS 60
Query: 440 RTIIKDLNRSKQSLQNFLDATPGF 511
+ I +D + +++ LD PGF
Sbjct: 61 QEIFEDFVLVESHVESLLDKLPGF 84
>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
Length = 1193
Score = 35.1 bits (77), Expect = 0.035
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +2
Query: 185 LSSSSTEMSQELKELCQLIFPSSPTENVIFFSEV----SDYIKKLGSQNWDYIRKEPERL 352
L+S+ T +Q KEL ++FPS E+ I+ +V +D+ K L S + P+RL
Sbjct: 666 LTSAETRYAQIEKELLAIVFPSEKFESYIYGRDVVHVETDH-KPLESIVLKPLCSAPQRL 724
Query: 353 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSK 472
+ L + EL + K +SR + ++N ++
Sbjct: 725 QRMLLRLQKYNLELQYKKGKEMFLADTLSRAYLPEVNATE 764
>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.1 bits (67), Expect = 0.58
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Frame = +2
Query: 122 KCKL*SVVPILNRRAHLHQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFSE---VSD 292
K KL V I H+ + S + S E +FF + + D
Sbjct: 198 KLKLEKVAEIKKINGHMMAIKRQKSDADGESLASSTYDTDEEFSDEEPELFFGDPQQLLD 257
Query: 293 YIKKLGSQNWDYIR--KEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNR 466
+L QN I+ +E E EEMK +QTQ+ +Y F AE ++ LN+
Sbjct: 258 IFAELEEQNLSLIQNSQETEEALEEMKQTIKQTQDRMMFSYGEF--KAEDQEKMLAALNK 315
Query: 467 SKQSL 481
+ +
Sbjct: 316 KVEEV 320
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 326 YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATP 505
YI ++ +L + + + QEL + YK FVE E S L Q+ NF ++ P
Sbjct: 465 YIEQQELQLQLQTRLAKAKAQELIYKEYKDFVEGGEHS------LRDKPQTPTNFPESVP 518
Query: 506 G 508
G
Sbjct: 519 G 519
>SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05)
Length = 431
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 245 PSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQE 391
P+S TEN + +S KKL ++W+ I EP ++T + T QE
Sbjct: 17 PASDTENTLTSVPLSTRRKKLVRESWELI--EPVKITIGKRIFTSGEQE 63
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 326 YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATP 505
YI ++ +L + + + QEL + YK FVE E S L Q+ NF ++ P
Sbjct: 171 YIEQQELQLQLQTRLAKAKAQELIYKEYKDFVEGGEHS------LRDKPQTPTNFPESVP 224
Query: 506 G 508
G
Sbjct: 225 G 225
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/94 (22%), Positives = 47/94 (50%)
Frame = +2
Query: 206 MSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQT 385
+SQ LKEL + + ENV+ +++ K S DY+RKE R+ ++ E+
Sbjct: 451 LSQSLKELNNRNYDA--LENVL--NDIEQ--KSSLSDAIDYLRKEIRRIKDDSNEFVERN 504
Query: 386 QELAFTNYKTFVETAEISRTIIKDLNRSKQSLQN 487
++ + E+ +++ ++ ++ K+ L++
Sbjct: 505 PKIEIQDKSN--ESKDLTSNLLNEVKTCKEMLES 536
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/94 (22%), Positives = 47/94 (50%)
Frame = +2
Query: 206 MSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQT 385
+SQ LKEL + + ENV+ +++ K S DY+RKE R+ ++ E+
Sbjct: 429 LSQSLKELNNRNYDA--LENVL--NDIEQ--KSSLSDAIDYLRKEIRRIKDDSNEFVERN 482
Query: 386 QELAFTNYKTFVETAEISRTIIKDLNRSKQSLQN 487
++ + E+ +++ ++ ++ K+ L++
Sbjct: 483 PKIEIQDKSN--ESKDLTSNLLNEVKTCKEMLES 514
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 80 RLVFEINYFVRNCVKCKL*SVVPILNRRAHLHQFQLSSSSTEMSQ 214
+L ++ + NC KCK + P+L R+ QL S TE S+
Sbjct: 988 KLRAQVKRVIHNCNKCKRYRIKPVLTPRS-TASAQLPSFRTEFSE 1031
>SB_57751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 TENVIFF-SEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYK 412
T+NV +F SE++ KK G K P +++K + AF NY+
Sbjct: 212 TDNVAYFGSEIAKQTKKRGDTGTSRRTKSPSSTFKKLKEREYFHRTKAFQNYE 264
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.1 bits (57), Expect = 9.4
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +2
Query: 185 LSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEM 364
+ S EM +E ++L + + + T+ +I VS+ +K Q ++ +RL
Sbjct: 1710 VKQSHQEMEKEKRKLQEKLRVT--TDELIRLKPVSEATQKKKGQVETELQNARKRLATLE 1767
Query: 365 KHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQ 475
+ +ELA N++ V EISR + +LN +K+
Sbjct: 1768 TTERKSEEELAKANHEIQVSKDEISR-LETELNAAKK 1803
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +2
Query: 176 QFQLSSSSTEMSQELKELCQLIFPSSPTEN-VIFFSEVSDYIKKLGSQNWDYIRKEPERL 352
Q + + + E+ Q L E QL + TE V+F +++ +Y KK+ +Y K +RL
Sbjct: 11 QVEFENQTKEIRQLLSE--QLKGYDARTEGKVLFLADLQEYCKKMSEVETEY-SKNLDRL 67
Query: 353 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLD 496
++ ++ Q+ + + +++ NR+KQ Q+F D
Sbjct: 68 SD---RFLDRLQKFKAQRKERSTTMDVWHKLLVETKNRAKQR-QSFSD 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,208
Number of Sequences: 59808
Number of extensions: 234706
Number of successful extensions: 570
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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