Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    32   0.22 
Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine n...    29   2.7  
AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho ...    29   2.7  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   2.7  
AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-...    29   2.7  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    27   6.2  
AL023845-7|CAA19542.1|  381|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   8.1  

>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 290 DYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRS 469
           D I+ +G +    +R++   L  E+K +  Q  +LAF NY T+ +    +    K     
Sbjct: 11  DDIRNMGLEE---MRRQKVLLASELKAIDAQISDLAFNNYGTYADAGRATHDCSKTFGEM 67

Query: 470 KQSLQNFLD 496
           +    N  D
Sbjct: 68  RDKTVNLSD 76


>Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical
           protein Y57G11B.3 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 269 IFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYK 412
           I FS VSD            +R+E +R+TE  KH+  +T  + F  YK
Sbjct: 235 ILFSSVSDLNNPDAKIK---MRQEMDRITERQKHIFTETFPVIFKEYK 279


>Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical
           protein C33D9.1b protein.
          Length = 826

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 251 SLGKLIDRVPLVPETFQLMMKITETDVSALA 159
           SLGKL+DR  +V + F +    +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761


>Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical
           protein C33D9.1a protein.
          Length = 844

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 251 SLGKLIDRVPLVPETFQLMMKITETDVSALA 159
           SLGKL+DR  +V + F +    +E D+ ALA
Sbjct: 749 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 779


>AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine
           nucleotide exchangefactor FGD-1 protein.
          Length = 826

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 251 SLGKLIDRVPLVPETFQLMMKITETDVSALA 159
           SLGKL+DR  +V + F +    +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761


>AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho
           guanine nucleotideexchange factor FGD-1 protein.
          Length = 844

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 251 SLGKLIDRVPLVPETFQLMMKITETDVSALA 159
           SLGKL+DR  +V + F +    +E D+ ALA
Sbjct: 749 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 779


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
            protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 275  FSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISR 442
            FSE   ++ K  S  WD ++ + + L    K + E+ QEL  T+    + T   SR
Sbjct: 891  FSEQLKFVDKATSVQWDSVQTDMKELAAGFK-MAEKEQELKGTDCPEALSTFTASR 945


>AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-GTP
           exchange factor protein.
          Length = 826

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 251 SLGKLIDRVPLVPETFQLMMKITETDVSALA 159
           SLGKL+DR  +V + F +    +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 163 SALTSVSVIFIIN*NVSGTKGTLSINFPKLTYRKCHI 273
           SALTS S +   +   + T  T S++ PK  +  CH+
Sbjct: 332 SALTSTSPLLASSTERTATTATSSVSTPKHPHHGCHV 368


>AL023845-7|CAA19542.1|  381|Caenorhabditis elegans Hypothetical
           protein Y51B9A.9 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +2

Query: 266 VIFFSEVSD---YIKKL----GSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVE 424
           VI F ++S+    IKK+       NW + R+    L   + H+ E+     ++ Y T+VE
Sbjct: 32  VIAFDQISERRVVIKKVVLPENFDNWQHWRRAQRELFCTL-HIQEENFVKMYSIY-TWVE 89

Query: 425 TAEISRTIIKDLNRSKQSLQNFLDATP 505
           T E  R           +L+NF+ +TP
Sbjct: 90  TVEEMREFYTVREYMDWNLRNFILSTP 116


>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 335 KEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSL 481
           ++ E + EE KH TE++ E   + + T    A +   +  +L ++ Q L
Sbjct: 38  EDEEEVEEEQKHQTEESSETKVSEFLTKTTFASLEGKVNANLLKAVQGL 86


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 188  SSSSTEMSQELKELCQLIFPSSPTENV 268
            SS S++ ++  +E C +++PS P+ +V
Sbjct: 1092 SSQSSQSAEPARETCYVMYPSGPSTSV 1118


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 188  SSSSTEMSQELKELCQLIFPSSPTENV 268
            SS S++ ++  +E C +++PS P+ +V
Sbjct: 1092 SSQSSQSAEPARETCYVMYPSGPSTSV 1118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,450
Number of Sequences: 27780
Number of extensions: 189751
Number of successful extensions: 578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)