Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.7  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 245 PSSPTENVIFFSEVSDYIKKLG 310
           P S T       EVS YIKK+G
Sbjct: 88  PYSETRFEEIKKEVSSYIKKIG 109


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 245 PSSPTENVIFFSEVSDYIKKLG 310
           P S T       EVS YIKK+G
Sbjct: 104 PYSETRFEEIKKEVSSYIKKIG 125


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 245 PSSPTENVIFFSEVSDYIKKLG 310
           P S T       EVS YIKK+G
Sbjct: 161 PYSETRFEEIKKEVSSYIKKIG 182


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 162 ERTYISFSYLHHQLKCLRN*RNSVN*FSQAHLQKMSY 272
           +R   ++SY   + K LRN  N ++  S+   +++ Y
Sbjct: 2   KRNISNYSYHDEKFKQLRNEDNKIDLRSRTKEERLQY 38


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 281 EVSDYIKKLG 310
           EVS YIKK+G
Sbjct: 173 EVSSYIKKIG 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,962
Number of Sequences: 438
Number of extensions: 2308
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)