Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309B01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp...    43   1e-04
At5g60230.2 68418.m07550 tRNA-splicing endonuclease, putative co...    29   2.5  
At5g60230.1 68418.m07549 tRNA-splicing endonuclease, putative co...    29   2.5  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   4.4  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    27   7.7  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    27   7.7  

>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           similar to SP|Q96MW5 Conserved oligomeric Golgi complex
           component 8 {Homo sapiens}; contains Pfam profile
           PF04124: Dor1-like family
          Length = 569

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +2

Query: 293 YIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSK 472
           Y+ +L S   D + KEPE L  + + +  Q QE+A  NY+ F+  A+    I ++++   
Sbjct: 28  YVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALLAIRQEVSSID 87

Query: 473 QSLQNFLDATP 505
           + L++ +   P
Sbjct: 88  KHLESLIGEVP 98


>At5g60230.2 68418.m07550 tRNA-splicing endonuclease, putative
           contains similarity to Swiss-Prot:P16658 tRNA-splicing
           endonuclease subunit SEN2 (tRNA-intron endonuclease)
           [Saccharomyces cerevisiae]; contains Pfam domain
           PF01974: tRNA intron endonuclease, catalytic C-terminal
           domain
          Length = 255

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
 Frame = +3

Query: 186 YLHHQLKCL------RN*RNSVN*FSQAHLQKMSY---FLAKSVITSKNWVLRIGTIFG 335
           +LH+ LKC+      R   N V+ +     ++ ++   F A S + SKNWVLR G  +G
Sbjct: 89  FLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYG 147


>At5g60230.1 68418.m07549 tRNA-splicing endonuclease, putative
           contains similarity to Swiss-Prot:P16658 tRNA-splicing
           endonuclease subunit SEN2 (tRNA-intron endonuclease)
           [Saccharomyces cerevisiae]; contains Pfam domain
           PF01974: tRNA intron endonuclease, catalytic C-terminal
           domain
          Length = 250

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
 Frame = +3

Query: 186 YLHHQLKCL------RN*RNSVN*FSQAHLQKMSY---FLAKSVITSKNWVLRIGTIFG 335
           +LH+ LKC+      R   N V+ +     ++ ++   F A S + SKNWVLR G  +G
Sbjct: 84  FLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPMFFKAYSHLRSKNWVLRSGLQYG 142


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 329  IRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLN 463
            +RK PER+ E+  HL  +   +     +   E  E      +D+N
Sbjct: 1535 VRKRPERIDEDNSHLVNRMANIVRPKSEEVEEDEEEEEQTFRDIN 1579


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +2

Query: 209 SQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWD-YIRKEPERLTEEMKHLTEQT 385
           ++ELK + +  F S+  ENV    E SD  ++   +  D  +  +   + EE   +    
Sbjct: 106 AKELKIIEEYKFESNEPENVPVLDETSDLFRRFRQKKRDALVDSKKIEIYEEFDTVAYWK 165

Query: 386 QELAFTNYKTFVETAEISRTIIKDLNRSKQSLQN 487
           Q+ A +  K    + E  R +++ L+ S +++++
Sbjct: 166 QK-ALSLEKMLEASTERERRLMEKLSESLKTMES 198


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +2

Query: 215 ELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKH 370
           +L  LC+ +FP+    N ++    S + ++ GS     + K  E L  E+ +
Sbjct: 526 QLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSSALHKAVESLMNELNN 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,464,593
Number of Sequences: 28952
Number of extensions: 169814
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)