Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309A12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.31 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 132 CPPIYRPRCRLS 167
           CPPIY P C+ S
Sbjct: 33  CPPIYEPSCQYS 44


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 39  LSLIFHRIQSMQGLHRHP 92
           +SL  H+I SM   H HP
Sbjct: 349 MSLTRHQISSMGHSHAHP 366


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 39  LSLIFHRIQSMQGLHRHP 92
           +SL  H+I SM   H HP
Sbjct: 349 MSLTRHQISSMGHSHAHP 366


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 357  LRSPPFSNSGLGPSFLESSSLSVTGET 277
            LR    +N+G   +  E ++L+VTG T
Sbjct: 1562 LRVTAHNNAGFNVAEYEFATLTVTGGT 1588


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,554
Number of Sequences: 336
Number of extensions: 1517
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)